View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7429_low_2 (Length: 718)
Name: NF7429_low_2
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 17 - 475
Target Start/End: Original strand, 24793952 - 24794410
Alignment:
| Q |
17 |
tgaaccaaaaagataaaccgtgcacagcaattattactatctaaaaaccgagacaaaaaagtaatttcacttagtatacttcccaattcatcaaaacaaa |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24793952 |
tgaaccaaaaagataaaccgtggacagcaattattactatctaaaaactgagacaaaaaagtaatttcacctagtatacttcccaattcatcaaaacaaa |
24794051 |
T |
|
| Q |
117 |
acctctttacttctaaatatagtcttaacctttgttctttctttctctcttcagaaactttttctgtgccacgttccattcatatttggttttctcaagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24794052 |
acctctttacttctaaatatagtcttaacctttgttctttctttctctcttccgaaactttttctgtgccacgttccattcatatttggttttctcaagg |
24794151 |
T |
|
| Q |
217 |
gtattctagtaaaaacagttactgtgtgaaacacacaacaaatctgaaagctggaattatcactctgttcactccttattggctgcacctccacagcaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24794152 |
gtattctagtaaaaacagttactgtgtgaaacacacaacaaatctgaaagctggaattatcactctgttcactccttattggctgcacctccacagcaac |
24794251 |
T |
|
| Q |
317 |
aaaatccaatgctattttatattcaatccttttctctcttgaaccttcctatagaggtttcttcactttcatttctacacctccactctcttcactacac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24794252 |
aaaatccaatgctattttatattcaatccttttctctcttgaaccttcctatagaggtttcttcactttcatttctacacctccactctcttcactacac |
24794351 |
T |
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| Q |
417 |
gctacattaaatccacaccccccaacacaacaacaaaaaattgttgaagtagaggtata |
475 |
Q |
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| T |
24794352 |
gctacattaaatccacaccccccaacacaacaacaaaaaattgttgaagtagaggtata |
24794410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 510 - 701
Target Start/End: Original strand, 24794445 - 24794637
Alignment:
| Q |
510 |
atgttattattgagttcatagtattcatatttcatagttcatatctttgtatatgttttttgtttaactatccgagacaccgataatctggagttccata |
609 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |
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| T |
24794445 |
atgttattgttaagttcatagtattcatatttcatagttcatatctttgtatatgttttttgtttaactatccgagacatcggtaatctggagttcgata |
24794544 |
T |
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| Q |
610 |
gagataagtaaagtctgataaaaaattgttacaccagaaatagaacttggtttcttccgaactattgtctttgtt-gtttttggtcatgtctt |
701 |
Q |
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||| ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24794545 |
gaggtaagtaaagtctgataaaaaattgttatatcagaaatcgaacttggtttcttccgaactattgtctttgttagtttttggtcatgtctt |
24794637 |
T |
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