View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7429_low_24 (Length: 243)
Name: NF7429_low_24
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_low_24 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 37083628 - 37083845
Alignment:
| Q |
17 |
agatatgtttctgcagaaagttgaatagagtttttgtcattcagcaaactacaaacaaagtaaggagacaacagtgaggaaatgaaaagacaaattaatt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37083628 |
agatatgtttttgcagaaagttgaatagagtttttgtccttcagcaaactacaaacaaagtaaggagacaacagtgaggaaatgaaaagacaaattaatt |
37083727 |
T |
|
| Q |
117 |
aatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctattaaaattgaaaactattatattttgcaggaaagttg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37083728 |
aatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctaataaaattgaaaactattatattttgcaggaaagttg |
37083827 |
T |
|
| Q |
217 |
aatggtgttcttctcact |
234 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
37083828 |
aatggtgttcttatcact |
37083845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 20404149 - 20403932
Alignment:
| Q |
17 |
agatatgtttctgcagaaagttgaatagagtttttgtcattcagcaaactacaaacaaagtaaggagacaacagtgaggaaatgaaaagacaaattaatt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
20404149 |
agatatgtttttgcagaaagttgaatagagtttttgtccttcagcaaactacaaacaaagtaaggagacatcagtgaggaaatgaaaagacaaattaatt |
20404050 |
T |
|
| Q |
117 |
aatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctattaaaattgaaaactattatattttgcaggaaagttg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20404049 |
aatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctaataaaattgaaaactattatattttgcaggaaagttg |
20403950 |
T |
|
| Q |
217 |
aatggtgttcttctcact |
234 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
20403949 |
aatggtgttcttatcact |
20403932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 34993247 - 34993464
Alignment:
| Q |
17 |
agatatgtttctgcagaaagttgaatagagtttttgtcattcagcaaactacaaacaaagtaaggagacaacagtgaggaaatgaaaagacaaattaatt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34993247 |
agatatgtttttgcagaaagttgaatagagtttttgtccttcagcaaactacaaataaagtaaggagacaacagtgaggaaatgaaaagataaattaatt |
34993346 |
T |
|
| Q |
117 |
aatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctattaaaattgaaaactattatattttgcaggaaagttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34993347 |
gatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctaataaaattgaaaactattatattttgcaggaaagttg |
34993446 |
T |
|
| Q |
217 |
aatggtgttcttctcact |
234 |
Q |
| |
|
|||| ||||||| ||||| |
|
|
| T |
34993447 |
aatgttgttcttttcact |
34993464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 41772145 - 41772362
Alignment:
| Q |
17 |
agatatgtttctgcagaaagttgaatagagtttttgtcattcagcaaactacaaacaaagtaaggagacaacagtgaggaaatgaaaagacaaattaatt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41772145 |
agatatgtttttgcagaaagttgaatagagtttttgtccttcagcaaactacaaacaaagtaaggagacaacaatgaggaaatgaaaagacaaattaatt |
41772244 |
T |
|
| Q |
117 |
aatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctattaaaattgaaaactattatattttgcaggaaagttg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41772245 |
aatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttactaataaaattgaaaactattatattttgcaggaaagttg |
41772344 |
T |
|
| Q |
217 |
aatggtgttcttctcact |
234 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
41772345 |
aatggtgttcttatcact |
41772362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 37393333 - 37393550
Alignment:
| Q |
17 |
agatatgtttctgcagaaagttgaatagagtttttgtcattcagcaaactacaaacaaagtaaggagacaacagtgaggaaatgaaaagacaaattaatt |
116 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
37393333 |
agatatgtttttgcagaaagtttaatagagtttttgtccttcagcaaactacaaacaaagtaaggagacaacaacgaggaaatgaaaagataaattaatt |
37393432 |
T |
|
| Q |
117 |
aatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctattaaaattgaaaactattatattttgcaggaaagttg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37393433 |
aatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctaataaaattgaaaactattatattttgcaggaaagttg |
37393532 |
T |
|
| Q |
217 |
aatggtgttcttctcact |
234 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
37393533 |
aatggtgttcttatcact |
37393550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 46389673 - 46389472
Alignment:
| Q |
19 |
atatgtttctgcagaaagttgaatagagtttttgtcattcagcaaactacaaacaaagtaaggagacaacagtgaggaaatgaaaagacaaattaattaa |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
46389673 |
atatgtttttgcagaaagttgaatagagtttttgtccttaagcaaactacaaacaaagtaaggagacaacagtgaggaaatgaaaagataaattaattta |
46389574 |
T |
|
| Q |
119 |
tttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctattaaaattgaaaactattatattttgcaggaaagttgaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46389573 |
tttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctaataaaattgaaaactattatattttgcaggaaagttgaa |
46389474 |
T |
|
| Q |
219 |
tg |
220 |
Q |
| |
|
|| |
|
|
| T |
46389473 |
tg |
46389472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 99 - 228
Target Start/End: Complemental strand, 7730130 - 7730001
Alignment:
| Q |
99 |
tgaaaagacaaattaattaatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctattaaaattgaaaactatta |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7730130 |
tgaaaagacaaattaattaatttagtacatattatataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctaataaaattgaaaactatta |
7730031 |
T |
|
| Q |
199 |
tattttgcaggaaagttgaatggtgttctt |
228 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
|
|
| T |
7730030 |
tattttgcaggaaagttgaacggtgttctt |
7730001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 46368727 - 46368522
Alignment:
| Q |
17 |
agatatgtttctgcagaaagttgaatagagtttttgtcattcagcaaactacaaacaaagtaaggagacaacagtgaggaaatgaaaagacaaattaatt |
116 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46368727 |
agatatgtttttgcataaagttgaatagagtttttgtccttcagcaaactacaaacaaagtaaggagacaacagtgaggaaatgaaaagacaaattagtt |
46368628 |
T |
|
| Q |
117 |
aatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctattaaaattgaaaactattatattttgcaggaaagttg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46368627 |
aatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctaataaaattgaaaactattacattttgcaggaaagttg |
46368528 |
T |
|
| Q |
217 |
aatggt |
222 |
Q |
| |
|
|||||| |
|
|
| T |
46368527 |
aatggt |
46368522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 4335153 - 4335369
Alignment:
| Q |
17 |
agatatgtttctgcagaaagttgaatagagtttttgtcattcagcaaactacaaacaaagtaaggagacaacagtgaggaaatgaaaagacaaattaatt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4335153 |
agatatgtttttgcagaaagttgaatagagtttttgtccttcagcaaactacaaacaaagtaaggagacaacagtgaggaaatgaaaagacaaattaatt |
4335252 |
T |
|
| Q |
117 |
aatttagtacatattgtataaatttttgctgaaaatgatgaattagtgtcttgtatgttgctattaaaattgaaaactattatattttgcaggaaagttg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
4335253 |
aatttagtacatattgtataaatttttgctgaaaatgatgaattagtgttttgtatgttgctaataaaattgaaatctattctattttgcaggaaagttg |
4335352 |
T |
|
| Q |
217 |
aatggtgttcttctcact |
234 |
Q |
| |
|
||| |||||||| ||||| |
|
|
| T |
4335353 |
aat-gtgttcttatcact |
4335369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 18344551 - 18344480
Alignment:
| Q |
142 |
ttgctgaaaatgatgaattagtgtcttgtatgttgctattaaaattgaaaactattatattttgcaggaaagt |
214 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||||| |
|
|
| T |
18344551 |
ttgctggaaataatgaattagtgtcttgtatgttgctaataaaattgaaaa-tataatatattgcaggaaagt |
18344480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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