View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7429_low_25 (Length: 231)
Name: NF7429_low_25
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 46602610 - 46602417
Alignment:
| Q |
18 |
atgaaagaaatgtttgatatataagagaggggatacacatacctaatatcttaagattttgaatagagatgcgacgtctccctctattgtagtcttgagt |
117 |
Q |
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| T |
46602610 |
atgaaaaaaatatttgatatataagagaggggacacacatacctaatatcttaagattttgaatagagatgtgacgtctccctctattgtagtcttgagt |
46602511 |
T |
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| Q |
118 |
catttgacccattcttgtttcttccgtgaccccgaactttccaacaaaattttgaagttcaatttacttatatggttgctcttaacctagtatg |
211 |
Q |
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| T |
46602510 |
catttgactcattcttgtttcttccgtgaccccgaactttccaacaaaattttgaagttcaatttacttatatgattgctcttaacctagtatg |
46602417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 37626644 - 37626696
Alignment:
| Q |
25 |
aaatgtttgatatataagagaggggatacacatacctaatatcttaagatttt |
77 |
Q |
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| T |
37626644 |
aaatgttggatatataagagaggtcatacatatacctaatgtcttaagatttt |
37626696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 42059907 - 42059847
Alignment:
| Q |
28 |
tgtttgatatataagagaggggatacacatacctaatatcttaagattttgaatagagatg |
88 |
Q |
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| T |
42059907 |
tgtttgatatataagagaggggacacttatacctaatgtcttaaggttttggatggagatg |
42059847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 7301699 - 7301647
Alignment:
| Q |
25 |
aaatgtttgatatataagagaggggatacacatacctaatatcttaagatttt |
77 |
Q |
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| T |
7301699 |
aaatgttagatatataaaagaggggacacatatacctaatatcttaaggtttt |
7301647 |
T |
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