View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7429_low_28 (Length: 212)
Name: NF7429_low_28
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 31703892 - 31703714
Alignment:
| Q |
16 |
atggttaaataggtttggtggatggttaaccaagtatttgaactgtattaaccatgtaaattgtaatcgaaacttgctatcaaaatttgggtaaacatat |
115 |
Q |
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| T |
31703892 |
atggttaaataggtttggtggatggttaaccaagtatttgaactgtattaaccatgtaaattgtaatcgaaacttgctatcaaaatttgggttaacatat |
31703793 |
T |
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| Q |
116 |
cactaatcaaataccaaatatacaaaaaacacaattccaacctgcatattgcatgcaaccatctgagctccatacatcc |
194 |
Q |
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| T |
31703792 |
cactaatcaaataccaaatatacaaaaaacacaattccaacctgcatattgcatgcaaccatctgagctccatacatcc |
31703714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 31653429 - 31653370
Alignment:
| Q |
135 |
atacaaaaaacacaattccaacctgcatattgcatgcaaccatctgagctccatacatcc |
194 |
Q |
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| T |
31653429 |
ataccaaaaacacaattctaacctgcatattgaatgcaaccatctgagctccatacatcc |
31653370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 35509024 - 35508984
Alignment:
| Q |
154 |
aacctgcatattgcatgcaaccatctgagctccatacatcc |
194 |
Q |
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| T |
35509024 |
aacctgcatattgaatgcaaccatctgagctccatacatcc |
35508984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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