View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7429_low_29 (Length: 212)

Name: NF7429_low_29
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7429_low_29
NF7429_low_29
[»] chr2 (11 HSPs)
chr2 (18-197)||(36193968-36194150)
chr2 (158-197)||(10109670-10109709)
chr2 (155-194)||(25186269-25186308)
chr2 (152-194)||(7262798-7262840)
chr2 (151-197)||(13528987-13529033)
chr2 (153-194)||(33063979-33064020)
chr2 (153-194)||(34685991-34686032)
chr2 (153-194)||(34708412-34708453)
chr2 (149-197)||(23718924-23718972)
chr2 (149-197)||(24106596-24106644)
chr2 (153-197)||(40874096-40874140)
[»] scaffold0007 (1 HSPs)
scaffold0007 (149-196)||(244468-244515)
[»] chr4 (13 HSPs)
chr4 (151-194)||(12698588-12698631)
chr4 (152-197)||(7248328-7248373)
chr4 (154-194)||(55421596-55421636)
chr4 (158-197)||(39171394-39171433)
chr4 (158-197)||(43374296-43374335)
chr4 (151-197)||(16431607-16431653)
chr4 (149-194)||(8020674-8020719)
chr4 (152-197)||(29731403-29731448)
chr4 (152-197)||(35021491-35021536)
chr4 (153-194)||(49952596-49952637)
chr4 (152-197)||(56565007-56565052)
chr4 (149-197)||(12502311-12502359)
chr4 (153-197)||(30848006-30848050)
[»] chr7 (9 HSPs)
chr7 (152-197)||(43681014-43681059)
chr7 (151-198)||(47070608-47070655)
chr7 (152-194)||(21597672-21597714)
chr7 (152-197)||(19416506-19416551)
chr7 (153-194)||(35142176-35142217)
chr7 (153-194)||(39926565-39926606)
chr7 (153-197)||(6023302-6023346)
chr7 (153-197)||(6528829-6528873)
chr7 (153-197)||(10025987-10026031)
[»] chr3 (9 HSPs)
chr3 (150-195)||(54113330-54113375)
chr3 (153-197)||(32843286-32843330)
chr3 (158-197)||(20370305-20370344)
chr3 (150-195)||(10617543-10617588)
chr3 (153-197)||(21506782-21506826)
chr3 (153-197)||(23316389-23316433)
chr3 (153-197)||(44579629-44579673)
chr3 (161-197)||(51505874-51505910)
chr3 (150-194)||(52904170-52904214)
[»] chr1 (6 HSPs)
chr1 (152-197)||(13590102-13590147)
chr1 (153-194)||(7732415-7732456)
chr1 (160-197)||(17917162-17917199)
chr1 (152-197)||(43840349-43840394)
chr1 (153-197)||(7550889-7550933)
chr1 (158-194)||(44641525-44641561)
[»] chr6 (7 HSPs)
chr6 (153-197)||(17935722-17935766)
chr6 (153-197)||(26320587-26320631)
chr6 (152-194)||(9677227-9677269)
chr6 (153-194)||(29069476-29069517)
chr6 (153-197)||(16130758-16130802)
chr6 (157-197)||(20847535-20847575)
chr6 (153-197)||(21296751-21296795)
[»] scaffold0009 (1 HSPs)
scaffold0009 (159-194)||(17724-17759)
[»] chr8 (6 HSPs)
chr8 (150-197)||(5325531-5325578)
chr8 (150-195)||(15310312-15310357)
chr8 (150-195)||(15490681-15490726)
chr8 (150-195)||(34997448-34997493)
chr8 (158-194)||(27718921-27718957)
chr8 (153-197)||(37872970-37873014)
[»] scaffold0006 (1 HSPs)
scaffold0006 (152-194)||(208934-208976)
[»] scaffold0012 (1 HSPs)
scaffold0012 (152-197)||(118811-118856)
[»] scaffold0011 (1 HSPs)
scaffold0011 (152-197)||(185255-185300)
[»] scaffold0157 (1 HSPs)
scaffold0157 (149-197)||(18118-18166)
[»] scaffold0031 (1 HSPs)
scaffold0031 (149-197)||(47265-47313)
[»] chr5 (7 HSPs)
chr5 (153-197)||(8543569-8543613)
chr5 (153-197)||(9584592-9584636)
chr5 (154-194)||(11310478-11310518)
chr5 (154-194)||(20688034-20688074)
chr5 (153-197)||(28207125-28207169)
chr5 (153-197)||(35270705-35270749)
chr5 (158-194)||(39610368-39610404)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 36194150 - 36193968
Alignment:
Q  18 agatggaacggttgttaaggttggcaaaatgactgtattaaccaacatggcaagcttccaaagatacgtattcattcgctaccttcttccattaaaggtt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36194150 agatggaacggttgttaaggttggcaaaatgactatattaaccaacatggcaagcttccaaagatacatattcattcgctaccttcttccattaaaggtt 36194051  T
Q  118 cttatttatatattgttgttcat---aagtagagattttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||||||||||||||||||||   ||||||||||| |||| |||||| |||| |||||||| |||| ||||||||||||||    
T  36194050 cttatttatatattgttgttcataacaagtagagattatgtcctcgtgatgttacctcagttggtttgaacaatgcataaaat 36193968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 10109709 - 10109670
Alignment:
Q  158 tcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  10109709 tcgtgagcttagctcagttggtttggacaatgcataaaat 10109670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 25186308 - 25186269
Alignment:
Q  155 tcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  25186308 tcatcgtgagtttagctcagttgatatggacaatgcataa 25186269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 7262798 - 7262840
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    ||||||||||||  |||||||||||||| ||||||||||||||    
T  7262798 ttgtcatcgtgaccttagctcagttgatatggacaatgcataa 7262840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 13528987 - 13529033
Alignment:
Q  151 tttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||| |||| |||||||||||||||||| ||| ||||||||||||    
T  13528987 tttgtcctcgtaaggttagctcagttgattaggataatgcataaaat 13529033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 33063979 - 33064020
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    |||| ||||||| |||||||||||||| ||||||||||||||    
T  33063979 tgtcctcgtgagcttagctcagttgatatggacaatgcataa 33064020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 34686032 - 34685991
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    |||| ||||||| |||||||||||| ||||||||||||||||    
T  34686032 tgtcttcgtgagcttagctcagttggtttggacaatgcataa 34685991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 34708453 - 34708412
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    |||| ||||||| |||||||||||| ||||||||||||||||    
T  34708453 tgtcttcgtgagcttagctcagttggtttggacaatgcataa 34708412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 23718924 - 23718972
Alignment:
Q  149 attttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||||||  |||||| ||||||||||||||||| |||| |||||||||    
T  23718924 attttgtccacgtgagtttagctcagttgatttgaacaacgcataaaat 23718972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 24106596 - 24106644
Alignment:
Q  149 attttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||||||  |||||| ||||||||||||||||| |||| |||||||||    
T  24106596 attttgtccacgtgagtttagctcagttgatttgaacaacgcataaaat 24106644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 40874140 - 40874096
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||||||||  ||| |||||||||| |||||||||||||||||    
T  40874140 tgtcatcgtgaatttaactcagttgatatggacaatgcataaaat 40874096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 244468 - 244515
Alignment:
Q  149 attttgtcatcgtgaggttagctcagttgatttggacaatgcataaaa 196  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  244468 attttatcatcgtgagcttagctcagttgatatggacaatgcataaaa 244515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 12698588 - 12698631
Alignment:
Q  151 tttgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    |||||| ||||||| |||||||||||||||||||||||||||||    
T  12698588 tttgtcttcgtgagcttagctcagttgatttggacaatgcataa 12698631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 7248328 - 7248373
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  7248328 ttgtcatcgtgagtttaactcagttgattgggacaatgcataaaat 7248373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 55421636 - 55421596
Alignment:
Q  154 gtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  55421636 gtcatcgtgagcttagctcagttggtttggacaatgcataa 55421596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 39171433 - 39171394
Alignment:
Q  158 tcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  39171433 tcgtgagcttagctcagttgatatggacaatgcataaaat 39171394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 43374335 - 43374296
Alignment:
Q  158 tcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  43374335 tcgtgagcttagctcagttgatatggacaatgcataaaat 43374296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 16431607 - 16431653
Alignment:
Q  151 tttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||||||||||  |||||||||||| | |||||||||||||||||    
T  16431607 tttgtcatcgtgaacttagctcagttggtatggacaatgcataaaat 16431653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 8020719 - 8020674
Alignment:
Q  149 attttgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    |||||||| |||||||  ||||||||||| ||||||||||||||||    
T  8020719 attttgtcctcgtgagcatagctcagttggtttggacaatgcataa 8020674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 29731448 - 29731403
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||||||||||| |||||||||||| || || |||||||||||||    
T  29731448 ttgtcatcgtgagtttagctcagttggttggggcaatgcataaaat 29731403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 35021536 - 35021491
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||| ||||||| |||||||||||||| |||||||| ||||||||    
T  35021536 ttgtcctcgtgagcttagctcagttgatatggacaatacataaaat 35021491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 49952637 - 49952596
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    |||||||||||| ||| |||| ||||||||||||||||||||    
T  49952637 tgtcatcgtgagcttaactcaattgatttggacaatgcataa 49952596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 56565052 - 56565007
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||| ||||||| |||||||| ||||| |||||||||||||||||    
T  56565052 ttgtcctcgtgagcttagctcaattgatatggacaatgcataaaat 56565007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 12502359 - 12502311
Alignment:
Q  149 attttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||| || |||| || |||||||||||||||||||||||||| |||||    
T  12502359 attttatcctcgtcagcttagctcagttgatttggacaatgcagaaaat 12502311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 30848050 - 30848006
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||| ||||| ||| |||||||| |||||||||||||||||||    
T  30848050 tgtcattgtgagcttaactcagttggtttggacaatgcataaaat 30848006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 43681059 - 43681014
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  43681059 ttgtcatcgtgagtttaactcagttgattgggacaatgcataaaat 43681014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 47070655 - 47070608
Alignment:
Q  151 tttgtcatcgtgaggttagctcagttgatttggacaatgcataaaatt 198  Q
    |||||||||||||| |||||||||||| ||  ||||||||||||||||    
T  47070655 tttgtcatcgtgagcttagctcagttggttgagacaatgcataaaatt 47070608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 21597672 - 21597714
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    ||||||||||||| ||| |||||||||| ||||||||||||||    
T  21597672 ttgtcatcgtgagcttatctcagttgatatggacaatgcataa 21597714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 19416506 - 19416551
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||| ||||||| |||||||||||| | |||||||||||||||||    
T  19416506 ttgtcctcgtgagcttagctcagttggtatggacaatgcataaaat 19416551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 35142217 - 35142176
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    |||| ||||||| |||||||||||||| ||||||||||||||    
T  35142217 tgtcctcgtgagcttagctcagttgatatggacaatgcataa 35142176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 39926606 - 39926565
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    |||||||||||| ||||||||||||||  |||||||||||||    
T  39926606 tgtcatcgtgagcttagctcagttgataaggacaatgcataa 39926565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 6023302 - 6023346
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||| ||||||| |||||||||||| |||||||||||| ||||||    
T  6023302 tgtcctcgtgagcttagctcagttggtttggacaatgcttaaaat 6023346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 6528873 - 6528829
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||||||||||  ||||||||||| | |||||||||||||||||    
T  6528873 tgtcatcgtgagtctagctcagttggtatggacaatgcataaaat 6528829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 10025987 - 10026031
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||| ||||||| ||| |||||||| |||||||||||||||||||    
T  10025987 tgtcctcgtgagcttaactcagttggtttggacaatgcataaaat 10026031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 54113330 - 54113375
Alignment:
Q  150 ttttgtcatcgtgaggttagctcagttgatttggacaatgcataaa 195  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||    
T  54113330 ttttgtcatcgtgagcttagctcagttgatatagacaatgcataaa 54113375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 32843330 - 32843286
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||| ||||||| |||||||||||| |||||||||||||||||||    
T  32843330 tgtcctcgtgagcttagctcagttggtttggacaatgcataaaat 32843286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 20370344 - 20370305
Alignment:
Q  158 tcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  20370344 tcgtgagcttagctcagttgatatggacaatgcataaaat 20370305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 10617543 - 10617588
Alignment:
Q  150 ttttgtcatcgtgaggttagctcagttgatttggacaatgcataaa 195  Q
    ||||||| ||||||| |||||||||||||| |||| ||||||||||    
T  10617543 ttttgtcctcgtgagcttagctcagttgatatggataatgcataaa 10617588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 21506826 - 21506782
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||| ||||||| |||||||||||| | |||||||||||||||||    
T  21506826 tgtcctcgtgagcttagctcagttggtatggacaatgcataaaat 21506782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 23316433 - 23316389
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||||||||| ||| |||||||| || ||||||||||||||||    
T  23316433 tgtcatcgtgagcttacctcagttggttgggacaatgcataaaat 23316389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 44579629 - 44579673
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||| ||||||| |||||||||||| | |||||||||||||||||    
T  44579629 tgtcctcgtgagcttagctcagttggtatggacaatgcataaaat 44579673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 51505874 - 51505910
Alignment:
Q  161 tgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||| |||||||||||||| |||||||||||||||||    
T  51505874 tgagtttagctcagttgatatggacaatgcataaaat 51505910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 52904214 - 52904170
Alignment:
Q  150 ttttgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    ||||||| |||||||||||||||||||| |  |||||||||||||    
T  52904214 ttttgtcctcgtgaggttagctcagttggtaaggacaatgcataa 52904170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 13590102 - 13590147
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||||    
T  13590102 ttgtcctcgtgagcttagctcagttggtttggacaatgcataaaat 13590147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 7732415 - 7732456
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    |||| ||||||| ||||||||||||||||||| |||||||||    
T  7732415 tgtcctcgtgagtttagctcagttgatttggataatgcataa 7732456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 17917199 - 17917162
Alignment:
Q  160 gtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  17917199 gtgagtttagctcagttgatatggacaatgcataaaat 17917162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 43840394 - 43840349
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||| ||||||| ||| |||||||||| |||||||||||||||||    
T  43840394 ttgtcctcgtgagtttaactcagttgatatggacaatgcataaaat 43840349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 7550889 - 7550933
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||||||||| ||| |||||||||| || ||||||||||||||    
T  7550889 tgtcatcgtgagcttaactcagttgatatgaacaatgcataaaat 7550933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 44641525 - 44641561
Alignment:
Q  158 tcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  44641525 tcgtgagtttagctcagttgatatggacaatgcataa 44641561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 17935722 - 17935766
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||||||||  |||||||||||| |||||||||||||||||||    
T  17935722 tgtcatcgtgaacttagctcagttggtttggacaatgcataaaat 17935766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 26320631 - 26320587
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||||||||| |||||||||||| | |||||||||||||||||    
T  26320631 tgtcatcgtgagcttagctcagttggtatggacaatgcataaaat 26320587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 9677227 - 9677269
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||    
T  9677227 ttgtcctcgtgagcttagctcagttggtttggacaatgcataa 9677269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 29069476 - 29069517
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    |||||||||||| ||||||||||||||  |||||||||||||    
T  29069476 tgtcatcgtgagcttagctcagttgatagggacaatgcataa 29069517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 16130758 - 16130802
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||||||||| |||||| ||||| | |||||||||||||||||    
T  16130758 tgtcatcgtgagcttagcttagttggtatggacaatgcataaaat 16130802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 20847575 - 20847535
Alignment:
Q  157 atcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||||| |||||||||||  |||||||||||||||||||    
T  20847575 atcgtgagcttagctcagttagtttggacaatgcataaaat 20847535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 21296751 - 21296795
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||| ||||||| |||||||||||| || ||||||||||||||||    
T  21296751 tgtcctcgtgagtttagctcagttggttgggacaatgcataaaat 21296795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 17724 - 17759
Alignment:
Q  159 cgtgaggttagctcagttgatttggacaatgcataa 194  Q
    |||||| |||||||||||||||||||||||||||||    
T  17724 cgtgagcttagctcagttgatttggacaatgcataa 17759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 5325578 - 5325531
Alignment:
Q  150 ttttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||||| ||||||| |||||||||||||||  |||||||||||||||    
T  5325578 ttttgtcctcgtgagtttagctcagttgattgagacaatgcataaaat 5325531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 15310312 - 15310357
Alignment:
Q  150 ttttgtcatcgtgaggttagctcagttgatttggacaatgcataaa 195  Q
    ||||||| ||||||| |||||||||||||| | |||||||||||||    
T  15310312 ttttgtcctcgtgagcttagctcagttgatatagacaatgcataaa 15310357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 15490681 - 15490726
Alignment:
Q  150 ttttgtcatcgtgaggttagctcagttgatttggacaatgcataaa 195  Q
    ||||||| ||||||| |||||||||||||| | |||||||||||||    
T  15490681 ttttgtcctcgtgagcttagctcagttgatatagacaatgcataaa 15490726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 34997448 - 34997493
Alignment:
Q  150 ttttgtcatcgtgaggttagctcagttgatttggacaatgcataaa 195  Q
    ||||||| ||||||| |||||||||||||| | |||||||||||||    
T  34997448 ttttgtcctcgtgagcttagctcagttgatatagacaatgcataaa 34997493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 27718957 - 27718921
Alignment:
Q  158 tcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  27718957 tcgtgagcttagctcagttgatatggacaatgcataa 27718921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 37872970 - 37873014
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||||||||| |||||||||||| | ||| |||||||||||||    
T  37872970 tgtcatcgtgagcttagctcagttggtatggtcaatgcataaaat 37873014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 208934 - 208976
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||    
T  208934 ttgtcctcgtgagcttagctcagttggtttggacaatgcataa 208976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 118811 - 118856
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||| ||||||| |||||||||||| |||| ||||||||||||||    
T  118811 ttgtcctcgtgagcttagctcagttggtttgaacaatgcataaaat 118856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 185255 - 185300
Alignment:
Q  152 ttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||| ||||||| |||||||||||| | |||||||||||||||||    
T  185255 ttgtcctcgtgagcttagctcagttggtatggacaatgcataaaat 185300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 18118 - 18166
Alignment:
Q  149 attttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    ||||| || |||| || |||||||||||||||||||||||||| |||||    
T  18118 attttatcctcgtcagcttagctcagttgatttggacaatgcagaaaat 18166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 47313 - 47265
Alignment:
Q  149 attttgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||||  ||||||| |||||||||||| | |||||||||||||||||    
T  47313 attttgttttcgtgagcttagctcagttggtatggacaatgcataaaat 47265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 8543569 - 8543613
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||| ||||||| ||| |||||||| |||||||||||||||||||    
T  8543569 tgtcctcgtgagcttaactcagttggtttggacaatgcataaaat 8543613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 9584592 - 9584636
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||||||||||| ||| ||||||||||| | ||||||||||||||    
T  9584592 tgtcatcgtgagtttaactcagttgattggaacaatgcataaaat 9584636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 11310518 - 11310478
Alignment:
Q  154 gtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    ||||||||||| |||||||||||| ||||||||||| ||||    
T  11310518 gtcatcgtgagcttagctcagttggtttggacaatgtataa 11310478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 20688034 - 20688074
Alignment:
Q  154 gtcatcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    ||||||||||  |||||||||||| ||||||||||||||||    
T  20688034 gtcatcgtgaacttagctcagttggtttggacaatgcataa 20688074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 28207125 - 28207169
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||| ||||||| |||||||||||| | |||||||||||||||||    
T  28207125 tgtcctcgtgagcttagctcagttggtatggacaatgcataaaat 28207169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 35270749 - 35270705
Alignment:
Q  153 tgtcatcgtgaggttagctcagttgatttggacaatgcataaaat 197  Q
    |||| ||||||| |||||||||||| || ||||||||||||||||    
T  35270749 tgtcctcgtgagcttagctcagttggttgggacaatgcataaaat 35270705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 39610404 - 39610368
Alignment:
Q  158 tcgtgaggttagctcagttgatttggacaatgcataa 194  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  39610404 tcgtgagcttagctcagttgatatggacaatgcataa 39610368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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