View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7429_low_5 (Length: 481)
Name: NF7429_low_5
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 46633472 - 46633014
Alignment:
| Q |
1 |
actagtgatggactaagtaaatcatcaaagaaaataataaacaactctttagtaaaacagtgctgttctgaaatatatctaacttggtaacatttataca |
100 |
Q |
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| T |
46633472 |
actagtgatggactaagtaaatcatcaaagaaaataa---acaactctttagtaaaacagtgctgttctgaaatatatctaacttggtaacatttataca |
46633376 |
T |
|
| Q |
101 |
tgacaaaaaaccattacaaatccttcacacaaatgtaattcacagacagtacaaacaatgaatataagaagnnnnnnnnnnctctacagaagttgtactt |
200 |
Q |
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| T |
46633375 |
tgacaaaaaaccattacaaatccttcacacaaatgtaattcacagacagtacaaacaatgaatataagaagaaaaaaaaa-ctctacagaagttgtactt |
46633277 |
T |
|
| Q |
201 |
tcaataaatcccagcactctatatcataaaaaacagaacttatattttctttagaactctaaaaggaaaagaacaactcagaaaccttaacacctcaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46633276 |
tcaataaatcccagcactctatatcataaaaaacagaacttatattttctttggaactctaaaaggaaaagaagaactcagaaaccttaacacctcaatg |
46633177 |
T |
|
| Q |
301 |
cttacgtttttgttggtcttgcaatgtcacttctattttagtgttgcacaaggtacacactcagtacctatctccctctggctgcaatcaaaacaatgta |
400 |
Q |
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| T |
46633176 |
cttacgtttttgttggtcttgcaatgtgacttctattttagtgttgcacaaggtacacactcagtacctatctccctctggctgcaatcaaaacaatgta |
46633077 |
T |
|
| Q |
401 |
acaaagcaattaatgacttatccgatatannnnnnnnncttcttcaaacgattgtatgataaaaa |
465 |
Q |
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| T |
46633076 |
acaaagcaattaatgacttatccgatatatttttttt--ttcttcaaacgattgtatgataaaaa |
46633014 |
T |
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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 7718136 - 7718059
Alignment:
| Q |
182 |
ctctacagaagttgtactttcaataaatcccagcactctatatcataaaaaacagaacttatattttctttagaactc |
259 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| |||||||||| |||||| |
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| T |
7718136 |
ctctacagaagttgtactttcaatatatccgagcactctatattataaaaaacagaacttgtattttcttttgaactc |
7718059 |
T |
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