View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7429_low_6 (Length: 480)
Name: NF7429_low_6
Description: NF7429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7429_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 33081130 - 33080871
Alignment:
| Q |
1 |
ggtaaatagaacctttgcaccatgcttagaacatttttgcatgaaatttggttagaatttaagccaataatgggtgtcaaggaaaaattatcannnnnnn |
100 |
Q |
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| T |
33081130 |
ggtaaatagaacctttgcaccatgcttagaacatttttgcatgaaatttggttagaatttaagccaataatgggtgtcaaggaaaaattatcattttatt |
33081031 |
T |
|
| Q |
101 |
n-ctcacacaaaagatgttgttccctctatatcctccacttgaattgttaatgttaatttagctttcaattaatcagttattttgtaaaaacaaaataaa |
199 |
Q |
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| T |
33081030 |
ttctcacacaaaagatgttgttccctctatatcctccacttg--ttgttaatgttaatttagctttcaattaatcagttattttgtaaaaacaaaataaa |
33080933 |
T |
|
| Q |
200 |
ttacctaaagtagtttgaatttagtttgattgtattttatattatcaattcaaataaatcaa |
261 |
Q |
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| T |
33080932 |
ttacctaaagtagtttgaatttagtttgattgtattttatattatcaattcaaataaatcaa |
33080871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 323 - 457
Target Start/End: Complemental strand, 33080838 - 33080704
Alignment:
| Q |
323 |
cgatgacttaattaacggaaatatatactgtacagtagctcttttctatttttgttgtttttctctcttctgaaaccatttatagtttatactttgaatc |
422 |
Q |
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| T |
33080838 |
cgatgacttaattaacggaaatatatactgtacagtagctcttttctatttttgttgtttttctcttttctgaaaccatttatagtttatactttgaatc |
33080739 |
T |
|
| Q |
423 |
ttgcttcttacctagaatactattattattttaca |
457 |
Q |
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| T |
33080738 |
ttgcttcttacctagaatattattattattttaca |
33080704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 103 - 292
Target Start/End: Complemental strand, 33084991 - 33084782
Alignment:
| Q |
103 |
tcacacaaaagatgttgttccctctatatcctccacttg-----aattgttaatgttaatt----tagctttcaattaatca----gttattttgtaaaa |
189 |
Q |
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||||||||||||||||||| |||| ||||||||||||| || |||||||||||||| ||||| ||||||||| | |||||||| |||| |
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| T |
33084991 |
tcacacaaaagatgttgtttcctccctatcctccacttgttgttaaatgttaatgttaattaatttagctatcaattaattaattagttatttttcaaaa |
33084892 |
T |
|
| Q |
190 |
acaaaataaattacctaaagtagtttgaat-------ttagtttgattgtattttatattatcaattcaaataaatcaaaatcgacgataacttaattaa |
282 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33084891 |
acaaaataaattacctaaagtagtttgaataattcaattagtttgattgtattttatattatcaattcaaataaatcaaaatcgacgatattttaattaa |
33084792 |
T |
|
| Q |
283 |
caacaatgac |
292 |
Q |
| |
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|||| ||||| |
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|
| T |
33084791 |
caacgatgac |
33084782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 41523044 - 41522983
Alignment:
| Q |
360 |
gctcttttctatttttgttgtttttctctc-ttctgaaaccatttatagtttatactttgaa |
420 |
Q |
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| T |
41523044 |
gctcttttctatttatgttgttttttcatccttctgaaaccatttattgtttatactttgaa |
41522983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 41514080 - 41514019
Alignment:
| Q |
360 |
gctcttttctatttttgttgtttttctctc-ttctgaaaccatttatagtttatactttgaa |
420 |
Q |
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|||||||||||||| |||||||||| || |||||||||||||||| ||||||||||||| |
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| T |
41514080 |
gctcttttctatttatgttgttttttcatccttctgaaaccatttattatttatactttgaa |
41514019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 452
Target Start/End: Complemental strand, 41514015 - 41513975
Alignment:
| Q |
412 |
tactttgaatcttgcttcttacctagaatactattattatt |
452 |
Q |
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|||||||| |||||||||||||||||||| |||||||||| |
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| T |
41514015 |
tactttgagtcttgcttcttacctagaatgttattattatt |
41513975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 452
Target Start/End: Complemental strand, 41522979 - 41522939
Alignment:
| Q |
412 |
tactttgaatcttgcttcttacctagaatactattattatt |
452 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||| |
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| T |
41522979 |
tactttgagtcttgcttcttacctagaatgttattattatt |
41522939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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