View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7430_high_1 (Length: 559)
Name: NF7430_high_1
Description: NF7430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7430_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 19 - 552
Target Start/End: Complemental strand, 7106533 - 7106000
Alignment:
| Q |
19 |
agacaggtaacactcccgaccaagatgaggcattggttcatatgggcgaaaaagttatgctaactttcaaattttcaacatggaaaagttccggtcaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7106533 |
agacaggtaacactcccgaccaagatgaggcattggttcatatgggcgaaaaagttatgctaactttcaaattttcaacatggaaaagttccggtcaaat |
7106434 |
T |
|
| Q |
119 |
ggatatgatcaagggtgctttcaagcccatacttaagtaccgcctggtaacccgatctgaatccatctccataggctggtgaggtatccgactcaatctg |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7106433 |
ggatatgatcaagggtgctttcgagcccatacttaagtaccgcctggtaacccgatctgaatccatctccataggctggtgaggtatccgactcaatctg |
7106334 |
T |
|
| Q |
219 |
gtttttgaaaaactcacaaagtttcttctcaaaatcagaccttttacccttcttcgatgatgcagaagaagaaggcggcattgatgatgatgaagatgaa |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7106333 |
gtttttgaaaaactcgcaaagtttcttctcaaaatcagaccttttacccttcttcgatgatgcagaagaagaaggcggcattgatgatgatgaagatgaa |
7106234 |
T |
|
| Q |
319 |
cacggtgcatcattattcccagacccagaatagagctctgatcctaaccacatatgagccaagatatgacagattccttcttcaacgtctggcctcaagt |
418 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7106233 |
catggtgcatcattattcccagacccagaatagagctctgatcctaaccacatatgagccaagatatgacagattccttcttcaacgtctggcctcaagt |
7106134 |
T |
|
| Q |
419 |
tgggataacctattnnnnnnntcatatattttgtataacttagcatcataaaacaaaatataaatttcttgcatgatgttatcagggaacagatgaaaca |
518 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7106133 |
tgggataacctattaaaaaaatcatatattttgtataacttagcatcataaaacaaaatataaatttcttgcatgatgttatcagggaacagatgaaaca |
7106034 |
T |
|
| Q |
519 |
cctttaagcctgagccatgcatgcattatctcat |
552 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
7106033 |
cctttaagcctgagccatgcatgcataatctcat |
7106000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 552
Target Start/End: Complemental strand, 7094316 - 7093786
Alignment:
| Q |
19 |
agacaggtaacactcccgaccaagatgaggcattggttcatatgggcgaaaaagttatgctaactttcaaattttcaacatggaaaagttccggtcaaat |
118 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7094316 |
agacaggtaacactccggaccatgatgaggcattggttcatatgggcgaaaaaattatgctagctttcaaattttcaacatggaaaagttccggtcaaat |
7094217 |
T |
|
| Q |
119 |
ggatatgatcaagggtgctttcaagcccatacttaagtaccgcctggtaacccgatctgaatccatctccataggctggtgaggtatccgactcaatctg |
218 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7094216 |
ggatatgatcaagggtacttttgagcccatacttaagtaccgcctggtaacccgatctgaatccatctccataggctggtgaggtatctgactcaatctg |
7094117 |
T |
|
| Q |
219 |
gtttttgaaaaactcacaaagtttcttctcaaaatcagaccttttacccttcttcgatgatgcagaagaagaaggcggcattgatgatgatgaagatgaa |
318 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||| || ||| ||||||| ||||||||||| ||| |
|
|
| T |
7094116 |
gtttttgaaaaactcgccaagtttcttctcaaaatcagaccgtttacccttcttcgatgatgc---agaggacggcagcattgacgatgatgaagacgaa |
7094020 |
T |
|
| Q |
319 |
cacggtgcatcattattcccagacccagaatagagctctgatcctaaccacatatgagccaagatatgacagattccttcttcaacgtctggcctcaagt |
418 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
7094019 |
gacggtgcatcgttattcccagatccagaatagagctctgattctaaccacatatgagccaagacttgacagattccttcttcaacttctggcctcaagt |
7093920 |
T |
|
| Q |
419 |
tgggataacctattnnnnnnntcatatattttgtataacttagcatcataaaacaaaatataaatttcttgcatgatgttatcagggaacagatgaaaca |
518 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7093919 |
tgggataacctataaaacaaaccatatattttgtctaacttagcatcataaaacaaaatataagtttcttgcatgatgttatcagggaacagatgaaaca |
7093820 |
T |
|
| Q |
519 |
cctttaagcctgagccatgcatgcattatctcat |
552 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
7093819 |
cctttaagcctgagccatgcatgcataatctcat |
7093786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 141 - 289
Target Start/End: Original strand, 33405917 - 33406065
Alignment:
| Q |
141 |
aagcccatacttaagtaccgcctggtaacccgatctgaatccatctccataggctggtgaggtatccgactcaatctggtttttgaaaaactcacaaagt |
240 |
Q |
| |
|
|||||||||||| || || ||||||| |||| ||| |||||||||||||||||||||||| |||| | ||||||||||| ||| ||||| | || |||| |
|
|
| T |
33405917 |
aagcccatacttgagcactgcctggttaccctctctaaatccatctccataggctggtgagctatcggtctcaatctggtgtttaaaaaatttaccaagt |
33406016 |
T |
|
| Q |
241 |
ttcttctcaaaatcagaccttttacccttcttcgatgatgcagaagaag |
289 |
Q |
| |
|
| |||||||||||| |||| |||||||||||| || |||| ||| |||| |
|
|
| T |
33406017 |
tccttctcaaaatcggaccgtttacccttctttgaagatgtagaggaag |
33406065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 33406119 - 33406197
Alignment:
| Q |
337 |
ccagacccagaatagagctctgatcctaaccacatatgagccaagatatgacagattccttcttcaacgtctggcctca |
415 |
Q |
| |
|
||||| || ||||||| |||||| ||||||||||||||||||||| || || |||||||||||||| || ||||||| |
|
|
| T |
33406119 |
ccagagccggaatagatctctgaatctaaccacatatgagccaagacttggcatattccttcttcaacttcaggcctca |
33406197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University