View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7430_high_11 (Length: 240)
Name: NF7430_high_11
Description: NF7430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7430_high_11 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 5182071 - 5182295
Alignment:
| Q |
16 |
ctttatacacatatcttactgaacatgagtcataattctatgtaatccctattgaagttcaataatcatgtttctcaatctatgattagacttgtaaata |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5182071 |
ctttatacacatatcttattgaacatgagtcataattctatgtcatccctattgaagttcaataatcatgtttctcaatctatgattagacttgtaaata |
5182170 |
T |
|
| Q |
116 |
cgaatgtgctcaatgtaagactgaatctccgctgcatcattatcaggctcgactgaagcaatgtcttatacaattgtcttccccaacaaagcaccatttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5182171 |
cgaatgtgctcaatgtaagactgaatctccgctgcatcattatcagggtcgactgaagcaatgtcttatacaattgtcttccccaacaaagcaccatttc |
5182270 |
T |
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| Q |
216 |
tcaatctaagaatgtccttatctct |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
5182271 |
tcaatctaagaatgtccttatctct |
5182295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 21887743 - 21887519
Alignment:
| Q |
16 |
ctttatacacatatcttactgaacatgagtcataattctatgtaatccctattgaagttcaataatcatgtttctcaatctatgattagacttgtaaata |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| || | |
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| T |
21887743 |
ctttatacacatatcttattgaacatgagtcataattctatgtcatccctattgaagttcaataatcatgtctctaaatctatgattagacttgtgaaca |
21887644 |
T |
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| Q |
116 |
cgaatgtgctcaatgtaagactgaatctccgctgcatcattatcaggctcgactgaagcaatgtcttatacaattgtcttccccaacaaagcaccatttc |
215 |
Q |
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| T |
21887643 |
cgaatgtgctcaatgtaagactaaatctctgcttcatcattatcagggtcaactgaagcaatgtcttatacgattgtcttccccgtcaaagcaccatttc |
21887544 |
T |
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| Q |
216 |
tcaatctaagaatgtccttatctct |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
21887543 |
tcaatctaagaatgtccttatctct |
21887519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 37479032 - 37478815
Alignment:
| Q |
20 |
atacacatatcttactgaacatgagtcataattctatgtaatccctattgaagttcaataatcatgtttctcaatctatgattagacttgtaaatacgaa |
119 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |
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| T |
37479032 |
atacacatatcttattgaacatgagtcataattctatgtcatccctattgaagttcaataatcatgt--ctcaatctatgattagacttgtgaacacgaa |
37478935 |
T |
|
| Q |
120 |
tgtgctcaatgtaagactgaatctccgctgcatcattatcaggctcgactgaagcaatgtcttatacaattgtcttccccaacaaagcaccatttctcaa |
219 |
Q |
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|||||||||| | | ||| |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37478934 |
tgtgctcaattttatactaaatctctacttcatcattatcagggtcgactgaagcaatgtcttatacaattgtcttccccgtcaaagcaccatttctcaa |
37478835 |
T |
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| Q |
220 |
tctaagaatgtccttatctc |
239 |
Q |
| |
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|||||||||||||||||||| |
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| T |
37478834 |
tctaagaatgtccttatctc |
37478815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 41052633 - 41052851
Alignment:
| Q |
22 |
acacatatcttactgaacatgagtcataattctatgtaatccctattgaagttcaataatcatgtttctcaatctatgattagacttgtaaatacgaatg |
121 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||| |
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| T |
41052633 |
acacatatcttattgaacatgagtcataattctatgtcatccctattgaagttcaataatcatgtctctcaatctatgataagacttgtgaacacgaatg |
41052732 |
T |
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| Q |
122 |
tgctcaatgtaagactgaatctccgctgcatcattatcaggctcgactgaagcaatgtcttatacaattgtcttccccaacaaagcaccatttctcaatc |
221 |
Q |
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|||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
41052733 |
tgctcaatgtaagactaaatctctgcttcatcattatcagggtcgactgaagcaatgtcttatacgattgtcttccccttcaaagcaccatttctcaatc |
41052832 |
T |
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| Q |
222 |
taagaatgtccttatctct |
240 |
Q |
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||||||||||||||||||| |
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| T |
41052833 |
taagaatgtccttatctct |
41052851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 1686197 - 1685974
Alignment:
| Q |
16 |
ctttatacacatatcttactgaacatgagtcataattctatgtaatccctattgaagttcaataatcatgtttctcaatctatgattagacttgtaaata |
115 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || | |
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| T |
1686197 |
ctttatacatatatcttattgaacatgagtcataattctatgtcatccctattgaagttcaataatcatgtctctcaatctatgattagacttgtgaaca |
1686098 |
T |
|
| Q |
116 |
cgaatgtgctcaatgtaagactgaatctccgctgcatcattatcaggctcgactgaagcaatgtcttatacaattgtcttccccaacaaagcaccatttc |
215 |
Q |
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|
|||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
1686097 |
cgaatgtgctcaatgtaagactaaatctctgcttcatcattatcagggtcgactgaagcaatgtctttaacaattgtcttccccgtcaaagcaccatttc |
1685998 |
T |
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| Q |
216 |
tcaatctaagaatgtccttatctc |
239 |
Q |
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||||||||||||| |||||||||| |
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| T |
1685997 |
tcaatctaagaatatccttatctc |
1685974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 52038538 - 52038315
Alignment:
| Q |
16 |
ctttatacacatatcttactgaacatgagtcataattctatgtaatccctattgaagttcaataatcatgtttctcaatctatgattagacttgtaaata |
115 |
Q |
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|
||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || | |
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| T |
52038538 |
ctttatacatatatcttattgaacatgagtcataattctatgtcatccctattgaagttcaataatcatgtctctcaatctatgattagacttgtgaaca |
52038439 |
T |
|
| Q |
116 |
cgaatgtgctcaatgtaagactgaatctccgctgcatcattatcaggctcgactgaagcaatgtcttatacaattgtcttccccaacaaagcaccatttc |
215 |
Q |
| |
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|||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
52038438 |
cgaatgtgctcaatgtaagactaaatctctgcttcatcattatcagggtcgactgaagcaatgtctttaacaattgtcttccccgtcaaagcaccatttc |
52038339 |
T |
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| Q |
216 |
tcaatctaagaatgtccttatctc |
239 |
Q |
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||||||||||||| |||||||||| |
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| T |
52038338 |
tcaatctaagaatatccttatctc |
52038315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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