View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7430_high_12 (Length: 231)
Name: NF7430_high_12
Description: NF7430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7430_high_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 7104476 - 7104701
Alignment:
| Q |
5 |
gtggccttcatggagaggatatagttgggttttatttctttcatttcaataactggtctggtactgtggtacaaatcattgatcaactattcacagttca |
104 |
Q |
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| T |
7104476 |
gtggccttcatggagaggatatagttgggttttatttctttcatttcaataactggtctggtactgtggtacaaatcattgatcaactattcacagttca |
7104575 |
T |
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| Q |
105 |
attcattgtactttttaattgtttaaacctatttgaaatcaaggatattctaattatgcatgttttaacttctaataattgtcctgtaaacagaaactaa |
204 |
Q |
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| T |
7104576 |
attcattgtactttttaattgtttaaacctatttgaaatctaggatattctaattatgcatgttttaacttctaataattgtcctgtaaacagaaactaa |
7104675 |
T |
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| Q |
205 |
aatgatttttatttgttagcctaatta |
231 |
Q |
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| T |
7104676 |
aatgattttta-ttgttagcctaatta |
7104701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 7092256 - 7092466
Alignment:
| Q |
21 |
ggatatagttgggttttatttctttcatttcaataactggtctggtactgtggtacaaatcattgatcaactattcacagttcaattcattgtacttttt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||| ||||||||||||| |||||||| ||||| |
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| T |
7092256 |
ggatatagttgggttttatttctttcatttcaataactggtctgatactgtggaacaaaccatggatcaaccattcacagttcaaatcattgtaattttt |
7092355 |
T |
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| Q |
121 |
aattgtttaaacctatttgaaatcaaggatattctaattatgcatgttttaacttctaataattgtcctgtaaacagaaactaaaatgatttttatttgt |
220 |
Q |
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| T |
7092356 |
aattgtttaaacctatttgaaatctaggattttctaattatgcatgttttaacttctaataattgtcctgtaaagagaaactaacatgatttttatttgc |
7092455 |
T |
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| Q |
221 |
tagcctaatta |
231 |
Q |
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|||||| |||| |
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| T |
7092456 |
tagcctgatta |
7092466 |
T |
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