View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7430_high_13 (Length: 210)
Name: NF7430_high_13
Description: NF7430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7430_high_13 |
 | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0304 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0319 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0107 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 10786971 - 10786774
Alignment:
| Q |
1 |
cctcgatctctttggctttggccaacttgcgtagggtttgccatcgaaaaagccattttctttcttatagcatttcttttgtaatggtttacttttgcgc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10786971 |
cctcgatctctttagctttggccaacttgcgtagggttttccatcgaaaa-gccattttctttcttatagcatttcttttgtaatggtttacttttgcgc |
10786873 |
T |
|
| Q |
101 |
tcttttagagcttattttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagtttattttcgaattactcttgtatgat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10786872 |
tcttttagagcttattttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttatgtttattttcgaattactcttgtatgat |
10786774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 7360824 - 7361020
Alignment:
| Q |
1 |
cctcgatctctttggctttggccaacttgcgtagggtttgccatcgaaaaagccattttctttcttatagcatttcttttgtaatggtttacttttgcgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| || |||||||| || | ||||||| | || ||||||||||||||||||||||||||| |||| |
|
|
| T |
7360824 |
cctcgatctctttggctttggccaacttatgtaggactttccatcgaagaatc-attttctgt-ttgtagcatttcttttgtaatggtttacttc-gcgc |
7360920 |
T |
|
| Q |
101 |
tcttttagagcttattttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagttta--ttttcgaattactcttgtatga |
198 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
7360921 |
tcttttagagcttattttgaaattttgtgtaaaccgcccattagttggc-ttaatgaaatgctatgtttgggtttatcttttcgaattactcttgtatga |
7361019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 14688822 - 14689018
Alignment:
| Q |
1 |
cctcgatctctttggctttggccaacttgcgtagggtttgccatcgaaaaagccattttctttcttatagcatttcttttgtaatggtttacttttgcgc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||| |||||||| || | ||||||| | || |||||||||||| ||||||||||||||| | || |
|
|
| T |
14688822 |
cctcaatctctttggctttggccaacttatgtaggtttttccatcgaagaatc-attttctgt-ttgtagcatttcttt-gtaatggtttacttt-gtgc |
14688917 |
T |
|
| Q |
101 |
tctttt-agagcttattttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagttta--ttttcgaattactcttgtatg |
197 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
14688918 |
tctttttagagtttattttgaaattttgtgtaaaccgcccatcagttggc-cccatgaaatgctatgtttgaatttatcttttcgaattactcttgtatg |
14689016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 10157661 - 10157527
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaa----actttgtgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||| |||||||| | |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
10157661 |
tagcatttcttttgtaatggtttac-tttgcgctc-tttagagcccattttgaagtttattttgtgtaaaccgcccattagttggcctt-atgaaatgcc |
10157565 |
T |
|
| Q |
164 |
atgtttga--gtttattttcgaattactcttgtatgat |
199 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
10157564 |
atgtttgaacttttcttttcgaattactcttgtatgat |
10157527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 41375775 - 41375972
Alignment:
| Q |
1 |
cctcgatctctttggctttggccaacttgcgtagggtttgccatcgaaaaagccattttctttcttatagcatttcttttgtaatggtttacttttgcgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41375775 |
cctcgatctctttggctttggccaacttgtgtagggttttccatcgaaaaa-ccattttcttttttatagcatttcttttgtaatggtttacttttgcgc |
41375873 |
T |
|
| Q |
101 |
tcttttagagcttattttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagttta-ttttcgaattactcttgtatgat |
199 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41375874 |
tcttctagagcttattttgaaactttgtgtaaaccgcccattagttggc-ctaatggaatgctatgtttgagtttatttttcgaattactcttgtatgat |
41375972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 22080787 - 22080697
Alignment:
| Q |
1 |
cctcgatctctttggctttggccaacttgcgtagggtttgccatcgaaaaagccattttctttcttatagcatttcttttgtaatggtttact |
93 |
Q |
| |
|
||||||||| ||||| |||||||| ||| |||||| || |||||||| || | ||||||| | || |||||||||||||||| ||||||||| |
|
|
| T |
22080787 |
cctcgatctttttggatttggccagcttatgtagggctttccatcgaagaatc-attttctgt-ttgtagcatttcttttgtagtggtttact |
22080697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 1729789 - 1729591
Alignment:
| Q |
1 |
cctcgatctctttggctttggccaacttgcgtagggtttgccatcgaaaaagccattttctttcttatagcatttcttt-tgtaatggtttacttttgcg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
1729789 |
cctcgatctctttggctttggccaacttgcgtagggttttccatcaaaaaa-ccattttcttttttatagcatttttttctataatggtttacttttgcg |
1729691 |
T |
|
| Q |
100 |
ctcttttagagcttattttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagttta-ttttcgaattactcttgtatga |
198 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
1729690 |
ctcttctagagcttattttgaaactttgtgtaaaccacccattagttggc-ctaatggaatgctatgtttgagtttattttttgaattactcttgtatga |
1729592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 14329353 - 14329550
Alignment:
| Q |
1 |
cctcgatctctttggctttggccaacttgcgtagggtttgccatcgaaaaagccattttctttcttatagcatttcttttgtaatggtttacttttgcgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | |||||||| || | ||||||| | || ||||||||||||||||| ||||||||| |||| |
|
|
| T |
14329353 |
cctcgatctctttggctttggccaacttatgtagggatctccatcgaagaatc-attttctgt-ttgtagcatttcttttgtaacggtttacttc-gcgc |
14329449 |
T |
|
| Q |
101 |
tctttt-agagcttattttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagttta--ttttcgaattactcttgtatg |
197 |
Q |
| |
|
|||||| ||||| |||||| ||| | ||||||||||||||||||| |||| || |||||||||||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
14329450 |
tctttttagagcctatttttaaattatgtgtaaaccgcccattagctggc-ttcatgaaatgctatatttgagtctatcttttcgaattactcttgtatg |
14329548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 18167072 - 18167203
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaac----tttgtgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
18167072 |
tagcatttcttttgtaatggtttacttt-gcgctcttttagagctcattttgaagtcttttttgtgtaaaccgcccattagttggcctt-atgaaatgct |
18167169 |
T |
|
| Q |
164 |
atgtttgagtt--tattttcgaattactcttgta |
195 |
Q |
| |
|
|||||||| || | ||||||||||||||||||| |
|
|
| T |
18167170 |
atgtttgaatttgtcttttcgaattactcttgta |
18167203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 74169 - 74033
Alignment:
| Q |
67 |
atagcatttcttttgtaatggtttacttttgcgctc-ttttagagcttattttgaa---actttgtgtaaaccgcccattagttggctttaatgaaatgc |
162 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
74169 |
atagcatttcttttgtaatggtttac-tttgcgctctttttagagcccattttgaagtctttttgtgtaaaccgcccattagttggcttt-atgaaatgc |
74072 |
T |
|
| Q |
163 |
tatgtttgagttta--ttttcgaattactcttgtatgat |
199 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
74071 |
tatgtttgaatttatcttttcgaattactcttgtatgat |
74033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 9e-32; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 23196294 - 23196429
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaac----tttgtgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
23196294 |
tagcatttcttttgtaatggtttacttt-gcgctcttttagagctcattttgaagtcttttttgtgtaaaccgcccattagttggcctt-atgaaatgct |
23196391 |
T |
|
| Q |
164 |
atgtttgagtt--tattttcgaattactcttgtatgat |
199 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||| |
|
|
| T |
23196392 |
atgtttgaatttgtcttttcgaattactcttgtatgat |
23196429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 23621899 - 23622033
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaa---actttgtgtaaaccgcccattagttggctttaatgaaatgcta |
164 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
23621899 |
tagcatttcttttgtaatggtttac-tttgcgctcttttagagttcattttgaagtctttttgtgtagaccgcccattagttggcctt-atgaaatgcta |
23621996 |
T |
|
| Q |
165 |
tgtttgagtt--tattttcgaattactcttgtatgat |
199 |
Q |
| |
|
||||||| || | ||||||||||||||||||||||| |
|
|
| T |
23621997 |
tgtttgaatttgtcttttcgaattactcttgtatgat |
23622033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 24954532 - 24954362
Alignment:
| Q |
1 |
cctcgatctctttggctttggccaacttgcgtagggtttgccatcgaaaaagccattttctttcttatagcatttcttttgtaatggtttacttttgcgc |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| | |||||||| || ||||||| | || ||||||||||||||||||||||||||| |||| |
|
|
| T |
24954532 |
cctcgatctctttagctttggccaacttatgtaggggtctccatcgaagaatt-attttctgt-ttgtagcatttcttttgtaatggtttacttc-gcgc |
24954436 |
T |
|
| Q |
101 |
tctttt-agagcttattttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagtt |
174 |
Q |
| |
|
|||||| ||||| | |||||||| | |||||||||||||||||||||||| || |||||||||||| |||||||| |
|
|
| T |
24954435 |
tctttttagagcctcttttgaaattatgtgtaaaccgcccattagttggc-ttcatgaaatgctatatttgagtt |
24954362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 22643058 - 22642923
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaa----actttgtgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||||||| ||||||||||||| || ||||||| | |
|
|
| T |
22643058 |
tagcatttcttttgtaatggtttac-tttgctctcttttagagctcattttgaattcttttttgtgtaaaccacccattagttggcctt-atgaaatttt |
22642961 |
T |
|
| Q |
164 |
atgtttgagttta--ttttcgaattactcttgtatgat |
199 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||||||||| |
|
|
| T |
22642960 |
atttttgaatttatcttttcgaattactcttgtatgat |
22642923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 18475 - 18610
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaac----tttgtgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
18475 |
tagcatttcttttgtaatggtttacttt-gcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggcctt-atgaaatgct |
18572 |
T |
|
| Q |
164 |
atgtttgagtt--tattttcgaattactcttgtatgat |
199 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||| |
|
|
| T |
18573 |
atgtttgaatttgtcttttcgaattactcttgtatgat |
18610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 33095 - 33230
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaac----tttgtgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
33095 |
tagcatttcttttgtaatggtttacttt-gcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggcctt-atgaaatgct |
33192 |
T |
|
| Q |
164 |
atgtttgagtt--tattttcgaattactcttgtatgat |
199 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||| |
|
|
| T |
33193 |
atgtttgaatttgtcttttcgaattactcttgtatgat |
33230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 14562681 - 14562816
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaac----tttgtgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
14562681 |
tagcatttcttttgtaatggtttacttt-gcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggcctt-atgaaatgct |
14562778 |
T |
|
| Q |
164 |
atgtttgagtt--tattttcgaattactcttgtatgat |
199 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||| |
|
|
| T |
14562779 |
atgtttgaatttgtcttttcgaattactcttgtatgat |
14562816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 13284815 - 13284915
Alignment:
| Q |
67 |
atagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaacttt----gtgtaaaccgcccattagttggctttaatgaaatgc |
162 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||| |||||| || ||| |||||||||||||||||| |||| || ||||||||| |
|
|
| T |
13284815 |
atagcatcccttttgtaatggtttacttttgcgctcttt-agagcccattttggaatttttatcgtgtaaaccgcccattagctggcctt-atgaaatgc |
13284912 |
T |
|
| Q |
163 |
tat |
165 |
Q |
| |
|
||| |
|
|
| T |
13284913 |
tat |
13284915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 4288 - 4423
Alignment:
| Q |
68 |
tagcatttctttt-gtaatggtttacttttgcgctcttttagagcttattttgaa---actttgtgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
4288 |
tagcatttctttttgtaatggtttacttt-gcgctcttttagagctcattttgaagtctttttgtgtaaaccgcccattagttggcctt-atgaaatgct |
4385 |
T |
|
| Q |
164 |
atgtttgagtt--tattttcgaattactcttgtatgat |
199 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||| |
|
|
| T |
4386 |
atgtttgaatttgtcttttcgaattactcttgtatgat |
4423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 28356 - 28221
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaactt----tgtgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||| || |||||||||| |
|
|
| T |
28356 |
tagcatttcttttgtaatggtttacttt-gcgctcttttagagcccgttttgaagtttcttttgtgtaaaccgcccattagttggcctt-atgaaatgct |
28259 |
T |
|
| Q |
164 |
atgtttgagtt--tattttcgaattactcttgtatgat |
199 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||| |
|
|
| T |
28258 |
atgtttgaatttgtcttttcgaattactcttgtatgat |
28221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 127983 - 128118
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaa----actttgtgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
127983 |
tagcatttcttttgtaatggtttac-tttgcgctcttttagagctcatttttaagtcttgtttgtgtaaaccacccattagttggcctt-atgaaatgct |
128080 |
T |
|
| Q |
164 |
atgtttgagtt--tattttcgaattactcttgtatgat |
199 |
Q |
| |
|
|||||||| || | |||| |||||||||||||||||| |
|
|
| T |
128081 |
atgtttgaatttgtcttttggaattactcttgtatgat |
128118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 19030621 - 19030754
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaact----ttgtgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||| |||||| || | ||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
19030621 |
tagcatttcttttgtaatggtttacttt-gcgctcttt-agagcccattttggaattccttttgtgtaaaccgcccattagttggcctt-atgaaatgct |
19030717 |
T |
|
| Q |
164 |
atgtttg-agtttattttcgaattactcttgtatgat |
199 |
Q |
| |
|
||||||| | ||| |||||||||||||| |||||||| |
|
|
| T |
19030718 |
atgtttgaactttcttttcgaattactcctgtatgat |
19030754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 38643 - 38538
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaa----actttgtgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
38643 |
tagcatttcttttgtaatggtttac-tttgcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggcctt-atgaaatgct |
38546 |
T |
|
| Q |
164 |
atgtttga |
171 |
Q |
| |
|
|||||||| |
|
|
| T |
38545 |
atgtttga |
38538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 21515306 - 21515172
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaa---ctttg-tgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || ||||| |||||||| |||| |||||||||||||||||||||| || ||||||||| |
|
|
| T |
21515306 |
tagcatttcttttgtaatggttta-ttttgcgctccttgcgagctcattttgaagatcctttcatgtaaaccgcccattagttggcctt-gtgaaatgct |
21515209 |
T |
|
| Q |
164 |
atgtttg-agtttattttcgaattactcttgtatgat |
199 |
Q |
| |
|
||||||| | ||| ||||||||||||||| ||||||| |
|
|
| T |
21515208 |
atgtttgaattttcttttcgaattactctcgtatgat |
21515172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 19136 - 19002
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaac----tttgtgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||| || |||||||| ||||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
19136 |
tagcatttcttttgtcatggtctacttt-gcgctcttttag-gcccattttgaagtctcttttgtgtaaaccgtccattagttggcctta-tgaaatgct |
19040 |
T |
|
| Q |
164 |
atgtttgagtttat--tttcgaattactcttgtatgat |
199 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
19039 |
atgtttgaatttgtcttttcgaattactcttgtatgat |
19002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 122226 - 122359
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaa---ctttg-tgtaaaccgcccattagttggctttaatgaaatgct |
163 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| |||| |||||||| |||| ||||| || ||||||||||||| ||| ||||||||| |
|
|
| T |
122226 |
tagcatttcgtttgtaatggttta-ttttgcgctctttc-gagcccattttgaagatcctttcatgtaagccacccattagttggcctta-tgaaatgct |
122322 |
T |
|
| Q |
164 |
atgtttgagttta-ttttcgaattactcttgtatgat |
199 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
122323 |
atgtttgaattttcttttcgaattactcttgtatgat |
122359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 35718 - 35622
Alignment:
| Q |
68 |
tagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaa---ctttgtgtaaaccgcccattagttggctttaatgaaatgcta |
164 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||| |||||| || |||| |||| | ||||||||||||||| || ||||||||||| |
|
|
| T |
35718 |
tagcatttcttttgtaatggttta-ttttgcgctc-tttagagcccattttggaattcctttttgtacaacgcccattagttggcctt-atgaaatgcta |
35622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 8826 - 8758
Alignment:
| Q |
128 |
tgtaaaccgcccattagttggcttta---atgaaatgctatgtttgagtttattttcgaattactcttg |
193 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| | ||| ||||||||| ||||||| |
|
|
| T |
8826 |
tgtaaaccgcccattagttggccttctgtatgaaatgctatgtttaaatttcttttcgaatcactcttg |
8758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 23694 - 23626
Alignment:
| Q |
128 |
tgtaaaccgcccattagttggcttta---atgaaatgctatgtttgagtttattttcgaattactcttg |
193 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| | ||| ||||||||| ||||||| |
|
|
| T |
23694 |
tgtaaaccgcccattagttggccttttgtatgaaatgctatgtttaaatttcttttcgaatcactcttg |
23626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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