View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7430_high_2 (Length: 512)

Name: NF7430_high_2
Description: NF7430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7430_high_2
NF7430_high_2
[»] chr5 (2 HSPs)
chr5 (19-497)||(7106055-7106533)
chr5 (19-497)||(7093841-7094316)
[»] chr8 (2 HSPs)
chr8 (141-289)||(33405917-33406065)
chr8 (337-415)||(33406119-33406197)


Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 497
Target Start/End: Complemental strand, 7106533 - 7106055
Alignment:
Q  19 agacaggtaacactcccgaccaagatgaggcattggttcatatgggcgaaaaagttatgctaactttcaaattttcaacatggaaaagttccggtcaaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7106533 agacaggtaacactcccgaccaagatgaggcattggttcatatgggcgaaaaagttatgctaactttcaaattttcaacatggaaaagttccggtcaaat 7106434  T
Q  119 ggatatgatcaagggtgctttcaagcccatacttaagtaccgcctggtaacccgatctgaatccatctccataggctggtgaggtatccgactcaatctg 218  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7106433 ggatatgatcaagggtgctttcgagcccatacttaagtaccgcctggtaacccgatctgaatccatctccataggctggtgaggtatccgactcaatctg 7106334  T
Q  219 gtttttgaaaaactcacaaagtttcttctcaaaatcagaccttttacccttcttcgatgatgcagaagaagaaggcggcattgatgatgatgaagatgaa 318  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7106333 gtttttgaaaaactcgcaaagtttcttctcaaaatcagaccttttacccttcttcgatgatgcagaagaagaaggcggcattgatgatgatgaagatgaa 7106234  T
Q  319 cacggtgcatcattattcccagacccagaatagagctctgatcctaaccacatatgagccaagatatgacagattccttcttcaacgtctggcctcaagt 418  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7106233 catggtgcatcattattcccagacccagaatagagctctgatcctaaccacatatgagccaagatatgacagattccttcttcaacgtctggcctcaagt 7106134  T
Q  419 tgggataacctattnnnnnnntcatatattttgtataacttagcatcataaaacaaaatataaatttcttgcatgatgt 497  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7106133 tgggataacctattaaaaaaatcatatattttgtataacttagcatcataaaacaaaatataaatttcttgcatgatgt 7106055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 497
Target Start/End: Complemental strand, 7094316 - 7093841
Alignment:
Q  19 agacaggtaacactcccgaccaagatgaggcattggttcatatgggcgaaaaagttatgctaactttcaaattttcaacatggaaaagttccggtcaaat 118  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  7094316 agacaggtaacactccggaccatgatgaggcattggttcatatgggcgaaaaaattatgctagctttcaaattttcaacatggaaaagttccggtcaaat 7094217  T
Q  119 ggatatgatcaagggtgctttcaagcccatacttaagtaccgcctggtaacccgatctgaatccatctccataggctggtgaggtatccgactcaatctg 218  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7094216 ggatatgatcaagggtacttttgagcccatacttaagtaccgcctggtaacccgatctgaatccatctccataggctggtgaggtatctgactcaatctg 7094117  T
Q  219 gtttttgaaaaactcacaaagtttcttctcaaaatcagaccttttacccttcttcgatgatgcagaagaagaaggcggcattgatgatgatgaagatgaa 318  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||   ||| || ||| ||||||| ||||||||||| |||    
T  7094116 gtttttgaaaaactcgccaagtttcttctcaaaatcagaccgtttacccttcttcgatgatgc---agaggacggcagcattgacgatgatgaagacgaa 7094020  T
Q  319 cacggtgcatcattattcccagacccagaatagagctctgatcctaaccacatatgagccaagatatgacagattccttcttcaacgtctggcctcaagt 418  Q
     |||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  7094019 gacggtgcatcgttattcccagatccagaatagagctctgattctaaccacatatgagccaagacttgacagattccttcttcaacttctggcctcaagt 7093920  T
Q  419 tgggataacctattnnnnnnntcatatattttgtataacttagcatcataaaacaaaatataaatttcttgcatgatgt 497  Q
    |||||||||||||         |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  7093919 tgggataacctataaaacaaaccatatattttgtctaacttagcatcataaaacaaaatataagtttcttgcatgatgt 7093841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 141 - 289
Target Start/End: Original strand, 33405917 - 33406065
Alignment:
Q  141 aagcccatacttaagtaccgcctggtaacccgatctgaatccatctccataggctggtgaggtatccgactcaatctggtttttgaaaaactcacaaagt 240  Q
    |||||||||||| || || ||||||| ||||  ||| |||||||||||||||||||||||| |||| | ||||||||||| ||| ||||| | || ||||    
T  33405917 aagcccatacttgagcactgcctggttaccctctctaaatccatctccataggctggtgagctatcggtctcaatctggtgtttaaaaaatttaccaagt 33406016  T
Q  241 ttcttctcaaaatcagaccttttacccttcttcgatgatgcagaagaag 289  Q
    | |||||||||||| |||| |||||||||||| || |||| ||| ||||    
T  33406017 tccttctcaaaatcggaccgtttacccttctttgaagatgtagaggaag 33406065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 33406119 - 33406197
Alignment:
Q  337 ccagacccagaatagagctctgatcctaaccacatatgagccaagatatgacagattccttcttcaacgtctggcctca 415  Q
    ||||| || ||||||| ||||||  |||||||||||||||||||||  || || |||||||||||||| || |||||||    
T  33406119 ccagagccggaatagatctctgaatctaaccacatatgagccaagacttggcatattccttcttcaacttcaggcctca 33406197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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