View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7430_low_1 (Length: 707)

Name: NF7430_low_1
Description: NF7430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7430_low_1
NF7430_low_1
[»] chr8 (1 HSPs)
chr8 (5-703)||(30403109-30403813)


Alignment Details
Target: chr8 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 5 - 703
Target Start/End: Original strand, 30403109 - 30403813
Alignment:
Q  5 tttaagattaagtatgttgagtttcatctcatttgtatatctggcagacaaaaccctcgaattcaatgtttcgttgctcaacacatgcaatctaaaagtt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  30403109 tttaagattaagtatgttgagtttcatctcatttgtatatctggcagacaaaaccctcaaattcaatgtttcgttgctcaacgcatgcaatctaaaagtt 30403208  T
Q  105 tg-cgttagaccctctttcacaattaaattcaagacaattatgaatacagtctctatttatacaaccaaactatttcaacacgtaagcgtctttttgagg 203  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30403209 tgacgttagaccctctttcacaattaaattcaagacaattatgaatacagtctccatttatacaaccaaactatttcaacacgtaagcgtctttttgagg 30403308  T
Q  204 tggagaatcctgatattattagatgtgacattgttgaccgtcacactgagttgttctcc----atgatattgggattctttaccttcaaaagaatgtcgc 299  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  30403309 tggagaatcctaatattattagacgtgacattgttgaccgtcacactgagttgttctcctctaatgatattgggattctttaccttcaaaagaatgtcgc 30403408  T
Q  300 gtttaccttgttttattcttttcatatgtaataattttgttatttacgattcattcgaatgcaactctacctgcctcgagagtctttgtatgcatctaac 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30403409 gtttaccttgttttattcttttcatatgtaataattttgttatttacgattcattcgaatgcaactctacttgcctcgagagtctttgtatgcatctaac 30403508  T
Q  400 ctcttcaattatacacagggtatgcccactatgtcgggggaacatctgcatttctaactcacctccaactcggaaatttagtggttagtttgttgatcag 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  30403509 ctcttcaattatacacagggtatgcccactatgtcgggggaacatctgcatttctaactcacctccaactcggaactttagtggttagtttgttgatccg 30403608  T
Q  500 catctagtttgaaacacttgatcttttatgtgggggaatatcagaagttcaatcattttctattggtattttcattattgtaaatggttatttactccga 599  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403609 catctattttgaaacacttgatcttttatgtgggggaatatcagaagttcaatcattttctattggtattttcattattgtaaatggttatttactccga 30403708  T
Q  600 ttgcagaataaatatgaaaaatatagttggagaaagaaaagaatgttaaggaggaggttag-gagggttatcttttggttactttctttgatgtccatct 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||     
T  30403709 ttgcagaataaatatgaaaaatatagttggagaaagaaaagaatgttaaggaggaggttagtgagggttatcttttggttactttctttgaaggccatca 30403808  T
Q  699 cattg 703  Q
    |||||    
T  30403809 cattg 30403813  T

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