View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7430_low_4 (Length: 391)

Name: NF7430_low_4
Description: NF7430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7430_low_4
NF7430_low_4
[»] chr8 (12 HSPs)
chr8 (1-384)||(2516392-2516775)
chr8 (237-384)||(2432455-2432602)
chr8 (16-378)||(2512127-2512484)
chr8 (237-378)||(2429473-2429614)
chr8 (236-378)||(2435815-2435957)
chr8 (1-134)||(2505708-2505841)
chr8 (252-378)||(2496825-2496951)
chr8 (234-378)||(2505506-2505650)
chr8 (44-131)||(1459414-1459501)
chr8 (44-131)||(2429121-2429208)
chr8 (44-131)||(2432039-2432126)
chr8 (41-131)||(2435471-2435561)
[»] chr5 (1 HSPs)
chr5 (256-300)||(41540465-41540509)
[»] chr1 (1 HSPs)
chr1 (270-306)||(1083134-1083170)


Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 2516775 - 2516392
Alignment:
Q  1 aaaatattgtcttcctttactttaatgtacgtcttttgcaactaggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaag 100  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516775 aaaatattgtcttcctttactttaatgtacatcttttgcaaccaggtggatatgttaaaaaataaatttggatacgatgaagccattaactacaaagaag 2516676  T
Q  101 aacatgacctcaatgcagcattaaaaaggtcagtacataagtgatgcagtcgaaattttttagttcaatatgtttgttgacatgaaaagtatagttaccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516675 aacatgacctcaatgcagcattaaaaaggtcagtacataagtgatgcagtcgaaattttttagttcaatatgtttgttgacatgaaaagtatagttaccg 2516576  T
Q  201 tgttacaataaacatgagacataccagtaaccggtggatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516575 tgttacaataaacatgagacataccagtaaccggtggatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgg 2516476  T
Q  301 gggaaagacacttgatgctgtactctcgaatatgaaactccatggccgcatacctgtgtgtggaatgatctcacagtattatct 384  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2516475 gggaaagacacttgatgctgtactcttgaatatgaaactccatggccgcatacctgtgtgtggaatgatctcacagtataatct 2516392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 237 - 384
Target Start/End: Original strand, 2432455 - 2432602
Alignment:
Q  237 gatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaa 336  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  2432455 gatatcaatgtatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgacgctgtactcttgaatatgaa 2432554  T
Q  337 actccatggccgcatacctgtgtgtggaatgatctcacagtattatct 384  Q
    |||||||||||||||||||||  |||||||||||||||||||| ||||    
T  2432555 actccatggccgcatacctgtaagtggaatgatctcacagtataatct 2432602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 2512484 - 2512127
Alignment:
Q  16 tttactttaatgtacgtcttttgcaactaggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatg 115  Q
    ||||||||||||||  |||| || ||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||  |||    
T  2512484 tttactttaatgtatatcttctggaaccaggtggatctgttgaagaataaatttggatacgatgaagccattaactacaaagaagaacaagacctggatg 2512385  T
Q  116 cagcattaaaaaggtcagtacataa--gtgatgcagtcgaaattttttagttcaatatgtttgttgacatgaaaag-tatagttaccgtgttacaataaa 212  Q
    ||||||| |||||||||||  | ||  ||  |||||  ||||||||  |||||||||||||||   |||| ||||  ||||||||| | |||   |   |    
T  2512384 cagcattgaaaaggtcagtttagaacagttttgcaggagaaatttt--agttcaatatgtttg---acataaaaaaatatagttactgcgtttgta---a 2512293  T
Q  213 catgagacataccagtaaccggtggatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacact 312  Q
    || ||||||  | | |||| |||||||||||||||  | |||| ||| ||||||||||||| |||||| ||||||||||||| ||||| || ||||||||    
T  2512292 cacgagacactcaactaactggtggatatcaatttggggaaatcaggcactttccagaaggaattgacgtttactttgagaacgttggaggcaagacact 2512193  T
Q  313 tgatgctgtactctcgaatatgaaactccatggccgcatacctgtgtgtggaatgatctcacagta 378  Q
    |||||| ||||||| ||| |||||||| ||||| ||||||||||||||||||||||||||||||||    
T  2512192 tgatgccgtactcttgaacatgaaactacatggtcgcatacctgtgtgtggaatgatctcacagta 2512127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 237 - 378
Target Start/End: Original strand, 2429473 - 2429614
Alignment:
Q  237 gatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaa 336  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  2429473 gatatcaatttatgtaaactagatactttccagaaggcattgacatttactttgagaatgtggggggaaagacacttgatgctgtactcttgaatatgaa 2429572  T
Q  337 actccatggccgcatacctgtgtgtggaatgatctcacagta 378  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  2429573 actccatgggcggatacctgtgtgtggaatgatctcacagta 2429614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 236 - 378
Target Start/End: Original strand, 2435815 - 2435957
Alignment:
Q  236 ggatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatga 335  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| | ||||||||    
T  2435815 ggatatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatga 2435914  T
Q  336 aactccatggccgcatacctgtgtgtggaatgatctcacagta 378  Q
     | |||||||||||||||||||  |||||||||||||||||||    
T  2435915 gagtccatggccgcatacctgtaagtggaatgatctcacagta 2435957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 2505841 - 2505708
Alignment:
Q  1 aaaatattgtcttcctttactttaatgtacgtcttttgcaactaggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaag 100  Q
    ||||||| | |||||||||||| ||  ||  ||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  2505841 aaaatatggccttcctttacttaaaaatatatcttttgcaaccaggtggatctgttgaagaataaatttggatacgatgaagccattaactacaaagaag 2505742  T
Q  101 aacatgacctcaatgcagcattaaaaaggtcagt 134  Q
    | || |||||||||||| |||| |||||||||||    
T  2505741 agcaagacctcaatgcaacattgaaaaggtcagt 2505708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 252 - 378
Target Start/End: Complemental strand, 2496951 - 2496825
Alignment:
Q  252 aaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaaactccatggccgcat 351  Q
    |||| ||| |||| || ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| ||| |||| | |||| ||||||||    
T  2496951 aaatcaggcacttccctgaaggcattgatatttactttgagaatgttggaggcaagacacttgatgctgtactcttgaacatgagagtccacggccgcat 2496852  T
Q  352 acctgtgtgtggaatgatctcacagta 378  Q
    |||||  ||||||||||||||||||||    
T  2496851 acctgcatgtggaatgatctcacagta 2496825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 234 - 378
Target Start/End: Complemental strand, 2505650 - 2505506
Alignment:
Q  234 gtggatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatat 333  Q
    |||| ||||| ||||||| ||| ||| |||||||||||||||||||  ||||||||||||| || || || |||||||||||||| ||||||| ||| ||    
T  2505650 gtggttatcattttatgtgaatcaggcactttccagaaggcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacat 2505551  T
Q  334 gaaactccatggccgcatacctgtgtgtggaatgatctcacagta 378  Q
    || | | || || ||||||||||||||||||||||||||||||||    
T  2505550 gagattacaaggtcgcatacctgtgtgtggaatgatctcacagta 2505506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 1459414 - 1459501
Alignment:
Q  44 aggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtc 131  Q
    |||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||  |||||||||||||| || ||||||||    
T  1459414 aggtggatttgttgaaaaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcagctttgaaaaggtc 1459501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 2429121 - 2429208
Alignment:
Q  44 aggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtc 131  Q
    |||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||  |||||||||||||| || ||||||||    
T  2429121 aggtggatttgttgaaaaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcagctttgaaaaggtc 2429208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 2432039 - 2432126
Alignment:
Q  44 aggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtc 131  Q
    |||||||||| || || |||||||||||||| ||||||||  |||||||||||||||||| ||||||||||||||| |||||||||||    
T  2432039 aggtggatcttttgaagaataaatttggatatgatgaagcatttaactacaaagaagaacctgacctcaatgcagctttaaaaaggtc 2432126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 2435471 - 2435561
Alignment:
Q  41 actaggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtc 131  Q
    ||||||| |||||||| || |||||||||||||| ||||||||| ||||||||||||||||||  |||||||||||| | |||||||||||    
T  2435471 actaggtagatctgttgaagaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcaactttaaaaaggtc 2435561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 41540465 - 41540509
Alignment:
Q  256 taggtactttccagaaggcattgacatttactttgagaatgttgg 300  Q
    |||||||||||| ||||| |||||||| |||||||| ||||||||    
T  41540465 taggtactttcccgaaggaattgacatatactttgacaatgttgg 41540509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 1083170 - 1083134
Alignment:
Q  270 aaggcattgacatttactttgagaatgttgggggaaa 306  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  1083170 aaggcattgacattaactttgacaatgttgggggaaa 1083134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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