View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7430_low_6 (Length: 340)
Name: NF7430_low_6
Description: NF7430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7430_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 2516757 - 2517074
Alignment:
| Q |
1 |
taaaggaagacaatatttttgttggtcaataaaaagaaactaaatggattcttggtaatcatactcgttttcaagttacaacttacaacaaatcattcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516757 |
taaaggaagacaatatttttgttggtcaataaaaagaaactaaatggattcttggtaatcatactcgttttcaagttacaacttacaacaaatcattcct |
2516856 |
T |
|
| Q |
101 |
aacccaagaattaagaaactattgtttgtttctgctggctgctaaaattctcttcgattaggctaactatgtaacacttgtagaattgaaattttctaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516857 |
aacccaagaattaagaaactattgtttgtttctgctggctgctaaaattttcttcgattaggctaactatgtaacacttgtagaattgaaattttctaat |
2516956 |
T |
|
| Q |
201 |
atatttaggcaaattctagtaattttgcaatgtaacagtactttcggaatataagtattgagcaaagaccttgattgttgttattgtaattagggaaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516957 |
atatttaggcaaattctagtaattttgcaatgtaacagtactttcggaatataagtattgagcaaagaccttgattgttgttattgtaattagggaaatt |
2517056 |
T |
|
| Q |
301 |
caaaacctatgaagcact |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2517057 |
caaaacctatgaagcact |
2517074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 2515727 - 2515776
Alignment:
| Q |
265 |
aagaccttgattgttgttattgtaattagggaaattcaaaacctatgaag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
2515727 |
aagaccttgattgttgttattgtaattagggaaatttagaacctatgaag |
2515776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 2506022 - 2506128
Alignment:
| Q |
182 |
agaattgaaattttctaatatatttaggcaaattctagtaattttgcaatgtaacagtactttcggaatataagtattgagcaaagaccttgattgttgt |
281 |
Q |
| |
|
|||||||||||||| ||||| | |||||| |||||||||| ||| | | | |||||| ||||| |||||| || |||||||| ||||||||||||| |
|
|
| T |
2506022 |
agaattgaaattttgtaataaaattaggctaattctagtattttggttacattacagtaatttcgtaatatagctagtgagcaaaaaccttgattgttga |
2506121 |
T |
|
| Q |
282 |
tattgta |
288 |
Q |
| |
|
||||||| |
|
|
| T |
2506122 |
tattgta |
2506128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 2512635 - 2512692
Alignment:
| Q |
139 |
ctgctaaaattctcttcgattaggctaactatgt-aacacttgtagaattgaaatttt |
195 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
2512635 |
ctgctacaattctcttcaattaggctaactatgtaaacatttctagaattgaaatttt |
2512692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University