View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7430_low_7 (Length: 270)
Name: NF7430_low_7
Description: NF7430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7430_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 50 - 252
Target Start/End: Original strand, 13379065 - 13379267
Alignment:
| Q |
50 |
atcgggaatacggacaataaagtgttcgtcgacaaccatggtgtcagagtagcctccatatgtgatagtgccatcaacattcttggaactgtatgtctga |
149 |
Q |
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| T |
13379065 |
atcgggaatacggacaataaagtgttcgtcgacaaccatggtgtcagagtagcctccatatgtgatagtgccatcaacattcttggaactgtatgtctga |
13379164 |
T |
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| Q |
150 |
atcatctttgagcagtaattttcgagatcctcgccacaactttgacatgaatggcaggatccaaccatgcaccccacaccaaccttatctccaactttga |
249 |
Q |
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| T |
13379165 |
atcatctttgagcaataattttcgagatcctcgccacaactttgacatgaatggcaggatccaaccatgcaccccacaccaaccctatctccaactttga |
13379264 |
T |
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| Q |
250 |
tgt |
252 |
Q |
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||| |
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| T |
13379265 |
tgt |
13379267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 69 - 249
Target Start/End: Original strand, 13373288 - 13373468
Alignment:
| Q |
69 |
aagtgttcgtcgacaaccatggtgtcagagtagcctccatatgtgatagtgccatcaacattcttggaactgtatgtctgaatcatctttgagcagtaat |
168 |
Q |
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|||||||||| | |||||||||| ||||||||||||||||||||||| || ||||||| |||||||| | ||||| | |||||||||||||| |||| |
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| T |
13373288 |
aagtgttcgtgggcaaccatggtatcagagtagcctccatatgtgattgttccatcaatattcttggcgccatatgtgaggatcatctttgagcaataat |
13373387 |
T |
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| Q |
169 |
tttcgagatcctcgccacaactttgacatgaatggcaggatccaaccatgcaccccacaccaaccttatctccaactttga |
249 |
Q |
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| T |
13373388 |
tctcgagatcatcaccacaactttgacatgagtggcaggatccaaccatgcaccctacacctaccttgtctccaactttga |
13373468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 28430569 - 28430404
Alignment:
| Q |
84 |
accatggtgtcagagtagcctccatatgtgatagtgccatcaacattcttggaactgtatgtctgaatcatctttgagcagtaattttcgagatcctcgc |
183 |
Q |
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||||| ||||| |||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||| |||| ||||||||||||||| ||| |
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| T |
28430569 |
accattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagtaattttcgagactttcgt |
28430470 |
T |
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| Q |
184 |
cacaactttgacatgaatggcaggatccaaccatgcaccccacaccaaccttatctccaactttga |
249 |
Q |
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||| |||| ||||| ||||||||| |||||||||||| ||||| ||||| ||||||||||||| |
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| T |
28430469 |
tgcaattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttga |
28430404 |
T |
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