View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7430_low_8 (Length: 264)
Name: NF7430_low_8
Description: NF7430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7430_low_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 37187965 - 37188221
Alignment:
| Q |
8 |
tgagaagaataatacaaaaccctcaccaaagaacagttggaaattaaatccttaactttgcacaaacttaatcaatattacatgcatgtggagaaagaac |
107 |
Q |
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| T |
37187965 |
tgagaagaataatacaaaaccctcaccaaagaacagttggaaattaaatcctcaactttgcacaaacttaatcaatattacatgcatgtggggaaagaac |
37188064 |
T |
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| Q |
108 |
gtgactaaacaatgcctagcaaataagtaaggtattctttagagacatattttgttacagggaaacccaatttgagattttccttgacataaatcaatcc |
207 |
Q |
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| T |
37188065 |
gttactcaacaatgcctagcaaataagtaaggtattctttagagacatattttgttacagggaaacccaatttgagattttccttgacataaatcaatcc |
37188164 |
T |
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| Q |
208 |
ttacacgaaaaggaagaactaaattggaagaaaatacaacccatcaatgtgtatata |
264 |
Q |
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| T |
37188165 |
ttacacgaaaaggaagaactaaattggaagaaaatacaacccatcaatgtgtatata |
37188221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 37892855 - 37893118
Alignment:
| Q |
8 |
tgagaagaataatacaaaaccctcaccaaagaacagtt-------ggaaattaaatccttaactttgcacaaacttaatcaatattacatgcatgtggag |
100 |
Q |
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| T |
37892855 |
tgagaagaataatacaaaaccctcaccaaagaacagttggaagttggaaattaaatccttaactttgcacaaacttaatcaatattacatgcatgtggag |
37892954 |
T |
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| Q |
101 |
aaagaacgtgactaaacaatgcctagcaaataagtaaggtattctttagagacatattttgttacagggaaacccaatttgagattttccttgacataaa |
200 |
Q |
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| T |
37892955 |
aaagaacgtgactaaacaatgcctagcaaataagtaaggtattctttagagacatattttgttacagggaaacccaatttgagattttccttgacataaa |
37893054 |
T |
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| Q |
201 |
tcaatccttacacgaaaaggaagaactaaattggaagaaaatacaacccatcaatgtgtatata |
264 |
Q |
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| T |
37893055 |
tcaatccttacacgaaaaggaagaactaaattggaagaaaatataacccatcaatgtgtatata |
37893118 |
T |
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