View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7431_low_1 (Length: 467)
Name: NF7431_low_1
Description: NF7431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7431_low_1 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Complemental strand, 31263262 - 31262820
Alignment:
| Q |
14 |
caatatcaatgatccttcaagtgtcagcacgagctaaatagaaaaattagtttagttattgttttaactataataaaatatccttcggctctaataacat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31263262 |
caatatcaatgatccttcaagtgtcagcacgagctaaatagaaaaagtagtttagttattgttttaactataataaaatatccttcggctctaataacat |
31263163 |
T |
|
| Q |
114 |
ttcaaatggcttggtgatataatcaaatttcaatgttgtgtgcatttatccaacatccgtcatacaaacaccgttaaaatttatcttaataatcatacct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31263162 |
ttcaaatggcttggtgatataatcaaatttcaatgttgtgtgcatttatccaacatccgtcatacaaacaccgttaaaatttatcttaataatcatacct |
31263063 |
T |
|
| Q |
214 |
agtgcaaatgaaaatatagagcatcacaagcatactgacatattatactatacgattgttgaacaaagttagtaactagcaacatattatgtttcattaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31263062 |
agtgcaaatgaaaatatagagcatcacaagcatactgacatattatactatacgattgttcaacaaagttagtaactagcaacatattatgtttcattaa |
31262963 |
T |
|
| Q |
314 |
tattataggtgcaacatggttctactaaattaaaaatagcatnnnnnnnttttacattacaattttatcaagccacttcattaatttaaatcttctttct |
413 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31262962 |
tattataggtgcaacatggttctactaaattaaaaatagcataaaaattttttacattacaattttatcaagccacttcattaatttaaatcttctttct |
31262863 |
T |
|
| Q |
414 |
cgtatcaccattcatccacggcaaacgcagaaccccacttcat |
456 |
Q |
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| T |
31262862 |
cgtatcaccattcatccacggcaaacgcagaaccccacttcat |
31262820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 19845589 - 19845504
Alignment:
| Q |
271 |
gttgaacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
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||||||||| ||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
19845589 |
gttgaacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcaacatggtcctattaaataaaaaatagcat |
19845504 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 15342386 - 15342467
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
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||||| ||||||||||| |||||||| |||||| |||||||||| || ||| ||||||| ||||||| | ||||||||||| |
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| T |
15342386 |
aacaatgttagtaactaacaacatatggtgtttccattaatattacagatgcgacatggtcctactaattaaaaaatagcat |
15342467 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 27708 - 27627
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
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||||| ||||||||||| |||||||| |||||| ||||||||||||||||| |||| || ||||||||| ||||||||||| |
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| T |
27708 |
aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat |
27627 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 24921069 - 24921150
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||| ||||||||||||||||| |||| || ||||||||| ||||||||||| |
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| T |
24921069 |
aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat |
24921150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 1083397 - 1083478
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
|
||||| |||| |||||| |||||||| |||||| ||||||||||||||||| |||| || ||||||||| ||||||||||| |
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|
| T |
1083397 |
aacaatgttaataactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat |
1083478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 31390970 - 31390889
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
|
||||| |||| |||||| |||||||| |||||| ||||||||||||||||| |||| || ||||||||| ||||||||||| |
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| T |
31390970 |
aacaatgttaataactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat |
31390889 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 40502704 - 40502785
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||| |||||||||| || ||||||||||| ||||||| | ||||||||||| |
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|
| T |
40502704 |
aacaatgttagtaactaacaacatatggtgtttccattaatattacagatgcaacatggtcctactaattaaaaaatagcat |
40502785 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 13819041 - 13819122
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||| ||||||||||||||||| |||| || ||||||||| ||||||||||| |
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|
| T |
13819041 |
aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat |
13819122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 4267678 - 4267597
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
|
||||| |||| |||||| ||||||| |||||| ||||||||||||||||| |||| || ||||||||| ||||||||||| |
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|
| T |
4267678 |
aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat |
4267597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 12211285 - 12211238
Alignment:
| Q |
308 |
cattaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||| ||||||||||| |
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|
| T |
12211285 |
cattaatattataggtgcgacattgtcctactaaataaaaaatagcat |
12211238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 29496823 - 29496742
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||| | ||||||||||||||||||||||| ||||||||| |||| |||||| |
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|
| T |
29496823 |
aacaatgttagtaactaacaacatatggtgtttccaataatattataggtgcaacatggtcctactaaataaaaagtagcat |
29496742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 24707802 - 24707721
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||| ||||||||||||||||| ||||| | ||||||| | ||||||||||| |
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|
| T |
24707802 |
aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacatgatcctactaattaaaaaatagcat |
24707721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 19148840 - 19148921
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
|
||||| |||| |||||| ||||||| |||||| ||||||||||||||||| |||| || ||||||||| ||||||||||| |
|
|
| T |
19148840 |
aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat |
19148921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 23675894 - 23675975
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
|
||||| |||| |||||| ||||||| |||||| ||||||||||||||||| |||| || ||||||||| ||||||||||| |
|
|
| T |
23675894 |
aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat |
23675975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 41549214 - 41549133
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
|
||||| |||| |||||| ||||||| |||||| ||||||||||||||||| |||| || ||||||||| ||||||||||| |
|
|
| T |
41549214 |
aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat |
41549133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 55042514 - 55042433
Alignment:
| Q |
275 |
aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat |
355 |
Q |
| |
|
||||| |||| |||||| ||||||| |||||| ||||||||||||||||| |||| || ||||||||| ||||||||||| |
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|
| T |
55042514 |
aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat |
55042433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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