View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7432_low_1 (Length: 805)
Name: NF7432_low_1
Description: NF7432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7432_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 760; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 760; E-Value: 0
Query Start/End: Original strand, 12 - 787
Target Start/End: Original strand, 6864558 - 6865333
Alignment:
| Q |
12 |
cgaagaatatacttaaagcattatgtgcgaaagttaatgttatacaatatgttatatgggatgaggtgcattagtggtagtatgatcgcacgtgaaaaga |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6864558 |
cgaaaaatatacttaaagcattatgtgcgaaagttaatgttatacaatatgttatatgggatgaggtgcattagtggtagtatgatcgcacgtgaaaaga |
6864657 |
T |
|
| Q |
112 |
aatgtgctttaattatacatatatgttgccttattatacatagtatcaaattacactacctggtcgtaagctctctgcaagaaggacgagtaaattgcgc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6864658 |
aatgtgctttaattatacatatatgttgccttattatacatagtatcaaattacactacctggtcgtaagctctctgcaagaaggacgagtaaattgcgc |
6864757 |
T |
|
| Q |
212 |
aaaaaggcttaagaccttcacaggctagaccagcagcaaacgtaacagcgtgttgttctgctatccctacatcgaaacatctcgtagggaaacggcgaag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6864758 |
aaaaaggcttaagaccttcacaggctagaccagcagcaaacgtaacagcgtgttgttctgctatccctacatcgaaacatctcgtagggaaacggcgaag |
6864857 |
T |
|
| Q |
312 |
gaagtgattcatgccggttccacctcccattgcagcatggattccaacaatgcctttgtcagcttctgcttctgcaatcaaagcatccacaaagcatgat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6864858 |
gaagtgattcatgccggttccacctcccattgcagcatggattccaacaatgcctttgtcagcttctgcttctgcaatcaaagcatccacaaagcatgat |
6864957 |
T |
|
| Q |
412 |
gtgagtaccggcgtgggagccttggtcttgaactgttttccagttgcaggatcaaacttagcaactcctgcaaaactaaaccatcttagatacctctcat |
511 |
Q |
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| T |
6864958 |
gtgagtaccggcgtgggagccttggtcttgaactgttttccagttgcaggatcaaacttagcaactcctgcaaaactaaaccatcttagatacctctcat |
6865057 |
T |
|
| Q |
512 |
gaaaatagaaagtcaaagattaattaggatttctaaggtggaatgaacaataataagtgaatcatgttgatgaatggcaaaagtaaaattgtaatgcctg |
611 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6865058 |
gaaaatagaaagtcaaagattaattatgatttctaaggttgaatgaacaataataagtgaatcatgttgatgaatggcaaaagtaaaattgtaatgcctg |
6865157 |
T |
|
| Q |
612 |
ttgtaccatggtacttgtctgctgctttttctgcatatgaatatcctaggcctttttcagtgacaacatggattaatacaggaccagttttcttaggact |
711 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6865158 |
ttgtaccatggtacttgtctgctgctttttctgcatatgaatatcctaggcctttttcagtgacaacatggattagtacaggaccagttttcttaggact |
6865257 |
T |
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| Q |
712 |
cttgacttgtttgagaatggcaacaagatcatcaatgctatgaccatcaacaggaccaatatagtcaagtccaagt |
787 |
Q |
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| T |
6865258 |
cttgacttgtttgagaatggcaacaagatcatcaatgctatgaccatcaacaggaccaatatagtcaagtccaagt |
6865333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 167 - 395
Target Start/End: Complemental strand, 49147306 - 49147078
Alignment:
| Q |
167 |
ctacctggtcgtaagctctctgcaagaaggacgagtaaattgcgcaaaaaggcttaagaccttcacaggctagaccagcagcaaacgtaacagcgtgttg |
266 |
Q |
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|||||||||| || || || |||||||| || ||||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||| || || || |
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| T |
49147306 |
ctacctggtcataggccctttgcaagaatgaggagtaaattgcacagaaaggcttaaggccttcacaagctagacctgcagcaaatgtaacggcatgctg |
49147207 |
T |
|
| Q |
267 |
ttctgctatccctacatcgaaacatctcgtagggaaacggcgaaggaagtgattcatgccggttccacctcccattgcagcatggattccaacaatgcct |
366 |
Q |
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| T |
49147206 |
ttctgctatccccacgtcaaagcatcttgttgggaatcggcgatggaagatattcatcccagttccacctcccatcgcagcatggattgcaataatgtct |
49147107 |
T |
|
| Q |
367 |
ttgtcagcttctgcttctgcaatcaaagc |
395 |
Q |
| |
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| T |
49147106 |
ttgtcagctttggcttctgcaatcaaagc |
49147078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 615 - 776
Target Start/End: Complemental strand, 49146850 - 49146689
Alignment:
| Q |
615 |
taccatggtacttgtctgctgctttttctgcatatgaatatcctaggcctttttcagtgacaacatggattaatacaggaccagttttcttaggactctt |
714 |
Q |
| |
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||||||| |||||||| || ||||| ||||| |||| |||||| |||||||||| |||| ||||||||| ||||||||||| || | |||| | | || |
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| T |
49146850 |
taccatgatacttgtcagcggctttctctgcgtatggatatccgcggcctttttcggtgataacatggatcaatacaggaccggtactattagtagtttt |
49146751 |
T |
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| Q |
715 |
gacttgtttgagaatggcaacaagatcatcaatgctatgaccatcaacaggaccaatatagt |
776 |
Q |
| |
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| T |
49146750 |
gacttctttgagaatggcaactagatcatctatgttgtgaccatcaacaggaccgatatagt |
49146689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 28469323 - 28469233
Alignment:
| Q |
202 |
taaattgcgcaaaaaggcttaagaccttcacaggctagaccagcagcaaacgtaacagcgtgttgttctgctatccctacatcgaaacatc |
292 |
Q |
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||||| || ||||| ||||| ||||||||| ||||| || || ||||| |||||||| |||||||| ||||| || ||||||||||||| |
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| T |
28469323 |
taaatagcacaaaatggcttgagaccttcagcggctaaccctgctgcaaatgtaacagcatgttgttcagctatgccgacatcgaaacatc |
28469233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 28477662 - 28477572
Alignment:
| Q |
202 |
taaattgcgcaaaaaggcttaagaccttcacaggctagaccagcagcaaacgtaacagcgtgttgttctgctatccctacatcgaaacatc |
292 |
Q |
| |
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||||| || ||||| ||||| ||||||||| ||||| || || ||||| |||||||| |||||||| ||||| || ||||||||||||| |
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| T |
28477662 |
taaatagcacaaaatggcttgagaccttcagtggctaaccctgctgcaaatgtaacagcatgttgttcagctatgccgacatcgaaacatc |
28477572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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