View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7432_low_13 (Length: 250)
Name: NF7432_low_13
Description: NF7432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7432_low_13 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 225143 - 225377
Alignment:
| Q |
16 |
atcaacagagggttttcagtcactaccttatctagtggcactattcagttccatgctgtggttgtattatgcattcctcaaaaaagatgaatttctcctt |
115 |
Q |
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| T |
225143 |
atcaacagagggttttcagtcactaccttatctagtggcactattcagttccatgctgtggttgtattatgcattcctcaaaaaagatgaatttctcctt |
225242 |
T |
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| Q |
116 |
attaccattaactcttttgggtgcgtcgtagagctcatttacatcatcttgtacataatctatgcgaccaaggatgcaagggtaattggcctatatatat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225243 |
attaccattaactcttttgggtgcgtcgtagagctcatttacatcatcttgtacataatctatgcgaccaaggatgcaagggtaattggcctatatatac |
225342 |
T |
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| Q |
216 |
agctaccttaattaatttccatcatataattaaaa |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
225343 |
agctaccttaattaatttccatcatataattaaaa |
225377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 239164 - 239343
Alignment:
| Q |
20 |
acagagggttttcagtcactaccttatctagtggcactattcagttccatgctgtggttgtattatgcattcctcaaaaaagatgaatttctccttatta |
119 |
Q |
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|||||||||||||||||||||||||| ||||| || | ||||| |||||||| |||||||| |||||||| ||||||||||||| |||||||| |||| |
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| T |
239164 |
acagagggttttcagtcactaccttacctagtagctttgttcagctccatgctttggttgtactatgcattgctcaaaaaagatgcttttctcctcatta |
239263 |
T |
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| Q |
120 |
ccattaactcttttgggtgcgtcgtagagctcatttacatcatcttgtacataatctatgcgaccaa-ggatgcaagggta |
199 |
Q |
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| T |
239264 |
ccataaactcatttggatgtgtggtagagaccatctacatcatattgtacatcatctatgc-accaagggatgcaagggta |
239343 |
T |
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