View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7432_low_2 (Length: 688)
Name: NF7432_low_2
Description: NF7432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7432_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 545; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 13 - 669
Target Start/End: Complemental strand, 2470776 - 2470101
Alignment:
| Q |
13 |
aatatttggaattttagcactggtaatcacaaatcttgctgcattgtgggcgttcacatagtctgctggtgagtcttgggatattgcaacttgactgccc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2470776 |
aatatttggaattttagcactggtaatcacaaatcttgctgcattgtgggcgttcacatagtctgctggtgagtcttgggatattgcaacttgactgccc |
2470677 |
T |
|
| Q |
113 |
acaatgagtattaatcccaaatcacacaatagagaaattgaacccattttggttcttagtaattaatttcagaatgctaaatgttgtggtgtagtaggtg |
212 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2470676 |
acaatgagtattaatcccaaaacacacaatagagaaagtgaacccattttggttcttagtaattaatttcagaatgctaaatgttgtggtgtagtaggtg |
2470577 |
T |
|
| Q |
213 |
ttggatgataaatgttgggggcttggggctctagtaatgtatttatagggatt---tcggcccctttgacagttttcatatattatacgttttaaatgtt |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
2470576 |
ttggatgataaatgttgggggcttggggctctagtaatgtatttatagggattatttcggcccctttgacagttttcatatatcctacattttaaatgtt |
2470477 |
T |
|
| Q |
310 |
gtagttgttgcaccgtgtataaaaccgcatatttttcaataaaaaatttaggattatactagggatgagaatgaaccgaagcaactcttgtaagaaaaaa |
409 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| |
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| T |
2470476 |
gtagttgttgcaccgtgtataacaccgcatatttttccataaaaaatttaggattatattagggatgagaatgaacggaagcaactcttttaagaaaaaa |
2470377 |
T |
|
| Q |
410 |
tatgaaagaaaccaactcaaaaataattagagatttgattcgataattcatcgttgtagatgatatattattctatccaagatctcttcagggagataga |
509 |
Q |
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| T |
2470376 |
tatgaaagaaaccaactcaaaaataattagagatttgattcgataattaatcgttgcagatgatatattattctatccaagatctcttcagggagataga |
2470277 |
T |
|
| Q |
510 |
gtgagagagaaagagataggaaattagaaagggaaatcacttaatacagttaaacaccacaaatttcaaactcattaatttgctacgttttttgggtttt |
609 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2470276 |
gtgagagagaaagagataggaaatacgaaagggaaatcacttaatacagttaaacaccacaaatttcaaactcattaatttgctacgatttttgggtttt |
2470177 |
T |
|
| Q |
610 |
attttatcttgatatgc----------------tatagctaaattgaaacaagtgacaatacaaataaatatgaat |
669 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2470176 |
attttatctttatatgctatatatagcttcttatatagctaaattgaaacaagtgacaatacaaataaatatgaat |
2470101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 2478566 - 2478450
Alignment:
| Q |
56 |
ttgtgggcgttcacatagtctgctggtgagtcttgggatattgcaacttgactgcccacaatgagtattaatcccaaatcacacaatagagaaattgaac |
155 |
Q |
| |
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||||| || ||||| |||||||||||||||||||| | | |||||| ||||| |||||||||| ||||||||||||| || || ||||||||| ||||| |
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| T |
2478566 |
ttgtgagcattcacgtagtctgctggtgagtcttgtgcttgtgcaacgtgactacccacaatgactattaatcccaaaacaaaccatagagaaaatgaac |
2478467 |
T |
|
| Q |
156 |
ccattttggttcttagt |
172 |
Q |
| |
|
|||||||||||||||| |
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| T |
2478466 |
acattttggttcttagt |
2478450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 2483070 - 2482957
Alignment:
| Q |
56 |
ttgtgggcgttcacatagtctgctggtgagtcttgggatattgcaacttgactgcccacaatgagtattaatcccaaatcacacaatagagaaattgaac |
155 |
Q |
| |
|
||||| || |||||||||| |||||| ||||||| || | |||||| ||||| |||||||||| ||||||||| ||| || || ||||||||| ||||| |
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| T |
2483070 |
ttgtgagccttcacatagtttgctggagagtctttggcttgtgcaacgtgactacccacaatgaatattaatcctaaaacaaaccatagagaaaatgaac |
2482971 |
T |
|
| Q |
156 |
ccattttggttctt |
169 |
Q |
| |
|
||||||||||||| |
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|
| T |
2482970 |
acattttggttctt |
2482957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 2469704 - 2469598
Alignment:
| Q |
55 |
attgtgggcgttcacatagtctgctggtgagtcttgggatattgcaacttgactgcccacaatgagtattaatcccaaatcacacaatagagaaattgaa |
154 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||| ||||||| |||| || || |||||||||||| |||| |
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| T |
2469704 |
attgtgggcgttcacgtagtctgctggtgagtcttgggcatgtgcaacgtgactacccataatgagtgttaaacctaacaggaacaatagagaaaatgaa |
2469605 |
T |
|
| Q |
155 |
cccattt |
161 |
Q |
| |
|
||||||| |
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| T |
2469604 |
cccattt |
2469598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 2466404 - 2466357
Alignment:
| Q |
45 |
atcttgctgcattgtgggcgttcacatagtctgctggtgagtcttggg |
92 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||| |||||||||||| |
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|
| T |
2466404 |
atcttgcttcgttgtgagcgttcacatagtctgcttgtgagtcttggg |
2466357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 2473980 - 2473944
Alignment:
| Q |
56 |
ttgtgggcgttcacatagtctgctggtgagtcttggg |
92 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||| |
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| T |
2473980 |
ttgtgggcattcacgtagtctgctggtgagtcttggg |
2473944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 2486239 - 2486203
Alignment:
| Q |
56 |
ttgtgggcgttcacatagtctgctggtgagtcttggg |
92 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||||| |
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| T |
2486239 |
ttgtgggcgttcacgtagtctgccggtgagtcttggg |
2486203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 3063658 - 3063694
Alignment:
| Q |
56 |
ttgtgggcgttcacatagtctgctggtgagtcttggg |
92 |
Q |
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|||||||||||||||||||||||| |||||| ||||| |
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| T |
3063658 |
ttgtgggcgttcacatagtctgctcgtgagttttggg |
3063694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 419 - 457
Target Start/End: Original strand, 46573631 - 46573669
Alignment:
| Q |
419 |
aaccaactcaaaaataattagagatttgattcgataatt |
457 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| |
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|
| T |
46573631 |
aaccaactcaaaaataattcgagattcgattcgataatt |
46573669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 18015662 - 18015626
Alignment:
| Q |
56 |
ttgtgggcgttcacatagtctgctggtgagtcttggg |
92 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||||| |
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| T |
18015662 |
ttgtgggcgttcacatagtctgctcgtgagttttggg |
18015626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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