View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7432_low_3 (Length: 598)

Name: NF7432_low_3
Description: NF7432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7432_low_3
NF7432_low_3
[»] chr4 (1 HSPs)
chr4 (15-598)||(42668687-42669274)


Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 15 - 598
Target Start/End: Original strand, 42668687 - 42669274
Alignment:
Q  15 attattcttgatcagtttccatcccatgtttcatgtttctgacattacaaaattactatagttaatgatcacaacctcacgttctagttctaattctaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42668687 attattcttgatcagtttccatcccatgtttcatgtttctgacattacaaaattactatagttaatgatcacaacctcacgttctagttctaattctaat 42668786  T
Q  115 taattagacccaacccaatataagcaatatatatctcattagtttttaatgaaggaacaaatttaatcccaatacaaccaaggtcccattggcaagggga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42668787 taattagacccaacccaatataagcaatatatatctcattagtttttaatgaaggaacaaatttaatcccaatacaaccaaggtcccattggcaagggga 42668886  T
Q  215 tcacctaattcatagctaaaaccgtactccgacatcaataatgatatgacatgaatatgtgtttataaatcgtagataatttttgctttaaaaattgata 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  42668887 tcacctaattcatagctaaaaccgtactccgacatcaataatgatataacatgaatatgtgtttataagttgtagataatttttgctttaaaaattgata 42668986  T
Q  315 atgtaaaattttatgatattaga----atttggtagaccgcttgctaccagattaccattatccggctaaccacttgatcacgctccagatgtccaatgg 410  Q
    |||||||||||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  42668987 atgtaaaattttatgatattagaatctatctggtagaccgcttgctaccagattaccattatccggctaaccacttgatcacgttccagatgtccagtgg 42669086  T
Q  411 tatctcgattacatgtttcgatatacataatataacaagtttatctaaatttcacaacaaatcatgttgatccatcaggtactactaccacatcttcatt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42669087 tatctcgattacatgtttcgatatacataatataacaagtttattcgaatttcacaacaaatcatgttgatccatcaggtactactaccacatcttcatt 42669186  T
Q  511 ctggatattttgatccatccatataacattaaccagaaagagaaaatacacacccgcaaacaaaatatcaaaatgaaccaaattaaga 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42669187 ctggatattttgatccatccatataacattaaccagaaagagaaaatacacacccgcaaacaaaatatcaaaatgaaccaaattaaga 42669274  T

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