View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7432_low_4 (Length: 590)
Name: NF7432_low_4
Description: NF7432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7432_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 25378184 - 25377736
Alignment:
| Q |
18 |
agatcaaacaaccattaagtaaacatgataaacaaaagtacaaaagtcagaaatataatatgtttgaaaaagaccttattagtgttccaccggcatttag |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25378184 |
agatcaaacaatcattaagtaaacatgataaacaaaagtacaaaagtcagcaatataatatgtttgaaaaagaccttattagtgttccaacggcatttag |
25378085 |
T |
|
| Q |
118 |
cgtccgcaatagttaaaaacacagaaaaatcgaaaaccaggacagagaagcggtgaaaaatcacatagaagagatagccggagtggttgaatttaaaaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25378084 |
cgtccgcaatagttaaaaacacagaaaaatcgaaaaccaggacagagaagcggtgaaaaatcacatagaagagatagccggagtggttgaatttaaaaca |
25377985 |
T |
|
| Q |
218 |
gagagatagagaggtggtttatttaaggtcggtttttggtaattaaagcagaaaggagaagaccgactaggccctaacttcattcaatcttcaagtaata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25377984 |
gagagatagagaggtggtttatttaaggtcgg-ttttggtaattaaagcagaaaggagaagaccgactaggccctaacttcattcaatcttcaagtaata |
25377886 |
T |
|
| Q |
318 |
gaagaattactcgcttgtgacttaaggcggaacaatgaagcttataactattgtagaccaaacatgagtaatcattatactactctaaacagcatggatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25377885 |
gaagaattactcgcttgtgacttaaggcggaacaatgaagcttataactattgtagaccaaacatgagtaatcattatactactctaaacagcatggatt |
25377786 |
T |
|
| Q |
418 |
aatttgatcaccacttcaatttcttcaaacaactatgccaagaagtgtta |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25377785 |
aatttgatcaccacttcaatttcttcaaacaactatgccaagaagtgtta |
25377736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 471 - 539
Target Start/End: Complemental strand, 25377705 - 25377637
Alignment:
| Q |
471 |
gacaaaaacaaagcatgtaaatgagaatgatggatttaatgcagactatacattggtaaaatgttttaa |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25377705 |
gacaaaaacaaagcatgtaaatgagaatgatggatttaatgcagactatacattggtaaaatgttttaa |
25377637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University