View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7432_low_5 (Length: 413)

Name: NF7432_low_5
Description: NF7432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7432_low_5
NF7432_low_5
[»] chr6 (10 HSPs)
chr6 (50-402)||(21263412-21263765)
chr6 (211-399)||(21269714-21269901)
chr6 (211-333)||(21268206-21268328)
chr6 (167-261)||(21141808-21141905)
chr6 (214-277)||(21217177-21217240)
chr6 (212-262)||(21246018-21246068)
chr6 (213-256)||(21181516-21181559)
chr6 (218-260)||(21221658-21221700)
chr6 (203-265)||(21314436-21314498)
chr6 (212-256)||(21178740-21178784)
[»] chr5 (6 HSPs)
chr5 (203-319)||(21654303-21654419)
chr5 (208-319)||(21635468-21635579)
chr5 (208-319)||(21643715-21643826)
chr5 (212-259)||(21638404-21638451)
chr5 (141-197)||(21634022-21634078)
chr5 (141-197)||(21642269-21642325)
[»] scaffold0060 (3 HSPs)
scaffold0060 (136-233)||(23469-23567)
scaffold0060 (212-260)||(10411-10459)
scaffold0060 (166-195)||(14163-14192)
[»] chr2 (1 HSPs)
chr2 (136-188)||(4907602-4907654)


Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 50 - 402
Target Start/End: Complemental strand, 21263765 - 21263412
Alignment:
Q  50 tacatttgatt-tgtctttatccataatttattttgtgtatttaaataatgtgttttaacttatgatcatacaaaattactcgtagaattgatgttcaat 148  Q
    ||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21263765 tacatttgattgtttctttgtccataatttattttgtgtatttaaataatgtgtttaaacttatgatcatacaaaattactcgtagaattgatgttcaat 21263666  T
Q  149 ttcctcttggaaattttgttctaaatccaaaattgaacaattattctatgaaacaagcctagcttaatccaaaattgaacaagtttatagttttaaagaa 248  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  21263665 ttcctcttggaaatcttgttctaaatcccaaattgaaaaattattctatgaaacaagcccagcttaatcgaaaattgaacaagtttatagttttaaagaa 21263566  T
Q  249 tagcatatacaattattcagcacaagacacataaaagagctagaaatatgagcaaaaggaaaaacaagacatataaaattgtttgttgtagcagtaccac 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21263565 tagcatatacaattattcagcacaagacacataaaagagctagaaatatgagcaaaaggaaaaacaagacatataaaatagtttgttgtagcagtaccac 21263466  T
Q  349 atcgaaaatgctgaagcaactaagatgaagatttacctataaaagatccttcat 402  Q
    ||||||| |||||||||||| ||||||||||||||| |||||||||||||||||    
T  21263465 atcgaaagtgctgaagcaaccaagatgaagatttacatataaaagatccttcat 21263412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 211 - 399
Target Start/End: Complemental strand, 21269901 - 21269714
Alignment:
Q  211 cttaatccaaaattgaacaagtttatagttttaaagaatagcatatacaattattcagcacaagacacataaaagagctagaaatatgagcaaaaggaaa 310  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |  ||||||    
T  21269901 cttaatcaaaaattgaacaagttcatagttt-aaagaatagcatatacaataattcaccacaagacatataaaagagctagaaatatgagtaggaggaaa 21269803  T
Q  311 aacaagacatataaaattgttt-gttgtagcagtaccacatcgaaaatgctgaagcaactaagatgaagatttacctataaaagatcctt 399  Q
    ||||||||| ||||||| |||| |||  ||| || || |||||||  ||| ||| ||| ||||| ||||| ||||||| |||||||||||    
T  21269802 aacaagacacataaaatagtttggtttcagcggtcccgcatcgaagttgccgaaacaaataagaggaaga-ttacctacaaaagatcctt 21269714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 211 - 333
Target Start/End: Complemental strand, 21268328 - 21268206
Alignment:
Q  211 cttaatccaaaattgaacaagtttatagttttaaagaatagcatatacaattattcagcacaagacacataaaagagctagaaatatgagcaaaaggaaa 310  Q
    ||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||  | ||||    
T  21268328 cttaatcaagaattgcacaagttcatagttttaaagaatagcatatacaattattcagcacaagacttataaaagagccagaaatatgagcaggatgaaa 21268229  T
Q  311 aacaagacatataaaattgtttg 333  Q
    ||||||||| ||||||| |||||    
T  21268228 aacaagacacataaaatagtttg 21268206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 21141905 - 21141808
Alignment:
Q  167 ttctaaatccaaaattgaacaattattcta--tgaaac-aagcctagcttaatccaaaattgaacaagtttatagttttaaagaatagcatatacaat 261  Q
    |||||||||||||||| |||||||||||||  || ||| ||||| | || ||||||||||||| |||||| | || | ||||||||||||||||||||    
T  21141905 ttctaaatccaaaattcaacaattattctacatgcaacgaagcccatctaaatccaaaattgatcaagttcaaagatgtaaagaatagcatatacaat 21141808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 21217240 - 21217177
Alignment:
Q  214 aatccaaaattgaacaagtttatagttttaaagaatagcatatacaattattcagcacaagaca 277  Q
    ||||||||||| |||||||| | |||| ||||||||||||||||||| | ||||||||| ||||    
T  21217240 aatccaaaatttaacaagttcaaagttctaaagaatagcatatacaaattttcagcacatgaca 21217177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 21246018 - 21246068
Alignment:
Q  212 ttaatccaaaattgaacaagtttatagttttaaagaatagcatatacaatt 262  Q
    ||||||||||||| |||||||| | |||||||||||||||| |||||||||    
T  21246018 ttaatccaaaattcaacaagttcaaagttttaaagaatagcttatacaatt 21246068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 21181559 - 21181516
Alignment:
Q  213 taatccaaaattgaacaagtttatagttttaaagaatagcatat 256  Q
    ||||||||||||||||||||| | |||| |||||||||||||||    
T  21181559 taatccaaaattgaacaagttaaaagttgtaaagaatagcatat 21181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 21221700 - 21221658
Alignment:
Q  218 caaaattgaacaagtttatagttttaaagaatagcatatacaa 260  Q
    |||||||||||||||| | |||| |||||||||||||||||||    
T  21221700 caaaattgaacaagttcaaagttgtaaagaatagcatatacaa 21221658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 21314498 - 21314436
Alignment:
Q  203 aagcctagcttaatccaaaattgaacaagtttatagttttaaagaatagcatatacaattatt 265  Q
    |||||||  ||||||||||||||||| ||||   |||| ||||||||||||||||||| ||||    
T  21314498 aagcctatattaatccaaaattgaaccagttctaagttctaaagaatagcatatacaaatatt 21314436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 21178784 - 21178740
Alignment:
Q  212 ttaatccaaaattgaacaagtttatagttttaaagaatagcatat 256  Q
    ||||||||||||| |||||||| | ||||||||||||||| ||||    
T  21178784 ttaatccaaaattaaacaagttcaaagttttaaagaatagtatat 21178740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 319
Target Start/End: Original strand, 21654303 - 21654419
Alignment:
Q  203 aagcctagcttaatccaaaattgaacaagttta-tagttttaaagaatagcatatacaattattcagcacaagacacataaaagagctagaaatatgagc 301  Q
    ||||||||||||||| ||| ||||||||||| | |||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||     
T  21654303 aagcctagcttaatcaaaatttgaacaagttcaatagttt-aaagaatagcatatacaataattcaccacaagacatataaaagagctcgaaatatgagt 21654401  T
Q  302 aaaaggaaaaacaagaca 319  Q
    |  |||||||||||||||    
T  21654402 aggaggaaaaacaagaca 21654419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 319
Target Start/End: Original strand, 21635468 - 21635579
Alignment:
Q  208 tagcttaatccaaaattgaacaagttta-tagttttaaagaatagcatatacaattattcagcacaagacacataaaagagctagaaatatgagcaaaag 306  Q
    |||||||||| ||| ||||||||||| | |||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||| |  ||    
T  21635468 tagcttaatcaaaatttgaacaagttcaatagttt-aaagaatagcatatacaataattcaccacaagacatataaaagagctcgaaatatgagtaggag 21635566  T
Q  307 gaaaaacaagaca 319  Q
    |||||||||||||    
T  21635567 gaaaaacaagaca 21635579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 319
Target Start/End: Original strand, 21643715 - 21643826
Alignment:
Q  208 tagcttaatccaaaattgaacaagttta-tagttttaaagaatagcatatacaattattcagcacaagacacataaaagagctagaaatatgagcaaaag 306  Q
    |||||||||| ||| ||||||||||| | |||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||| |  ||    
T  21643715 tagcttaatcaaaatttgaacaagttcaatagttt-aaagaatagcatatacaataattcaccacaagacatataaaagagctcgaaatatgagtaggag 21643813  T
Q  307 gaaaaacaagaca 319  Q
    |||||||||||||    
T  21643814 gaaaaacaagaca 21643826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 21638404 - 21638451
Alignment:
Q  212 ttaatccaaaattgaacaagtttatagttttaaagaatagcatataca 259  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||    
T  21638404 ttaatccaaaattgaacaagttcaaagttctaaagaatagcatataca 21638451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 21634022 - 21634078
Alignment:
Q  141 tgttcaatttcctcttggaaattttgttctaaatccaaaattgaacaattattctat 197  Q
    |||||||||||||| | |  || | ||||||||||||||||||||||||||||||||    
T  21634022 tgttcaatttcctcatagttatctagttctaaatccaaaattgaacaattattctat 21634078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 21642269 - 21642325
Alignment:
Q  141 tgttcaatttcctcttggaaattttgttctaaatccaaaattgaacaattattctat 197  Q
    |||||||||||||| | |  || | ||||||||||||||||||||||||||||||||    
T  21642269 tgttcaatttcctcatagttatctagttctaaatccaaaattgaacaattattctat 21642325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 23469 - 23567
Alignment:
Q  136 attgatgttcaatttcctcttggaaattttgttctaaatccaaaattgaacaattattctatgaaac-aagcctagcttaatccaaaattgaacaagtt 233  Q
    ||||||||||||||| ||||   | || |||||||||||||||||||||| |||||||||||| ||| ||||| | |||||||||||||||||||||||    
T  23469 attgatgttcaattttctctcatacatcttgttctaaatccaaaattgaaaaattattctatgcaacaaagcccatcttaatccaaaattgaacaagtt 23567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 10411 - 10459
Alignment:
Q  212 ttaatccaaaattgaacaagtttatagttttaaagaatagcatatacaa 260  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  10411 ttaatccaaaattgaacaagttcaaagttttaaagaatagcatatacaa 10459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 195
Target Start/End: Original strand, 14163 - 14192
Alignment:
Q  166 gttctaaatccaaaattgaacaattattct 195  Q
    ||||||||||||||||||||||||||||||    
T  14163 gttctaaatccaaaattgaacaattattct 14192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 4907654 - 4907602
Alignment:
Q  136 attgatgttcaatttcctcttggaaattttgttctaaatccaaaattgaacaa 188  Q
    ||||||||||||||| ||||  || || |||||| ||||||||||||||||||    
T  4907654 attgatgttcaattttctctcagacatcttgttccaaatccaaaattgaacaa 4907602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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