View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7432_low_7 (Length: 356)
Name: NF7432_low_7
Description: NF7432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7432_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 225739 - 225419
Alignment:
| Q |
18 |
acagcaatgcatatgtccttgaggaagagaccatagccaaaccacataattgcactcaatgtgagtgtgaatgacaaattgaaaggcataaactcaacac |
117 |
Q |
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| T |
225739 |
acagcaatgcatatgtccttgaggaagagaccatagccaaaccacataattgcactcaatgtgagtgtgaatgacaaattgaaaggcataaactcaacac |
225640 |
T |
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| Q |
118 |
tctttgtccgtacaacttgtgccacaatggttagtggtgctgcaaaaacactgactgatatagaaacacaaatccatccaagaacttggacacgaatcgg |
217 |
Q |
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| T |
225639 |
tctttgtccgtacaacttgtgccacaatggttagtggtgctgcaaaaacactgactgatatagaaacacaaatccatccaagaacttggacacgaatcgg |
225540 |
T |
|
| Q |
218 |
accatgcaccgcgtacttggtcaccaaaaggatcaaaccaaatgatccaatgttcattgccaaaagcagcttaatagttaatttctgcaattatgtaatg |
317 |
Q |
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| T |
225539 |
accatgcaccgcgtacttggtcaccaaaaggatcaaaccaaatgatccaatgttcattgccaaaagcagcttaatagttaatttctgcaattatgtaatg |
225440 |
T |
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| Q |
318 |
aatttatggacaaaactttag |
338 |
Q |
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| T |
225439 |
aatttatggacaaaactttag |
225419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 239816 - 239698
Alignment:
| Q |
18 |
acagcaatgcatatgtccttgaggaagagaccatagccaaaccacataattgcactcaatgtgagtgtgaatgacaaattgaaaggcataaactcaacac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
239816 |
acagcaatgcatatgtccttgaggaagagaccatagccaaaccacattgtggcactcaatgtgagagtgaatgacaaattgaaaggcataaattcaacac |
239717 |
T |
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| Q |
118 |
tctttgtccgtacaacttg |
136 |
Q |
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| T |
239716 |
tctttgtacgaacaacttg |
239698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 239598 - 239511
Alignment:
| Q |
139 |
ccacaatggttagtggtgctgcaaaaacactgactgatatagaaacacaaatccatccaagaacttggacacgaatcggaccatgcac |
226 |
Q |
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|||||||| |||||||||||||||| ||||| || | |||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
239598 |
ccacaatgcttagtggtgctgcaaagacactaacactaagggaaacacaaacccatccaagaacttggacacgaagtggaccatgcac |
239511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 1185276 - 1185348
Alignment:
| Q |
139 |
ccacaatggttagtggtgctgcaaaaacactgactgatatagaaacacaaatccatccaagaacttggacacg |
211 |
Q |
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|||||||| ||| |||||||||||| ||||| | |||||| || ||||||||||||||| ||||| ||||| |
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| T |
1185276 |
ccacaatgcttaatggtgctgcaaagacactaattgatatggatgtacaaatccatccaaggacttgaacacg |
1185348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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