View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7433_high_2 (Length: 723)

Name: NF7433_high_2
Description: NF7433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7433_high_2
NF7433_high_2
[»] chr4 (1 HSPs)
chr4 (97-711)||(39212159-39212785)


Alignment Details
Target: chr4 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 97 - 711
Target Start/End: Complemental strand, 39212785 - 39212159
Alignment:
Q  97 actactactacaaatcatgtttctgttttcacacccccctcaagacactcaaaaccaaacacattccgaatcacata---------cacta---gtacct 184  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |         |||||   ||||||    
T  39212785 actactactacaaatcatgtttctgttttcacacccccctcaaaacactcaaaaccaaacacattccgaatcacaaagagtaccaccactaccagtacct 39212686  T
Q  185 tacatttgcatacacatacactaaacatgcctcgtttaataacacccttcttccctctcttctttttcttcacattagcttcctctaccaactctacact 284  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39212685 tacttttgcatacacatacactaaacatgcctcgtttaataacacccttcttccctctcttctttttcttcacattagcttcctctaccaactctacact 39212586  T
Q  285 atcacaagacgcagtatctttactatcgtttaaacaaaacgcagaccaaaacaacaaactactctatacaataaacgaaccttatgattactgcgaatgg 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39212585 atcacaagacgcagtatctttactatcgtttaaacaaaacgcagaccaaaacaacaaactactctatacaataaacgaaccttatgattactgcgaatgg 39212486  T
Q  385 caaggagtcaaatgtgcacaaggcagagtagtacgctacgttgttcaatcgttaaacctcaccggttttttctcaccaaacacgttaacccggctcgacc 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39212485 caaggagtcaaatgtgcacaaggcagagtagtacgctacgttgttcaatcgttaaacctcaccggttttttctcaccaaacacgttaacccggctcgacc 39212386  T
Q  485 aactccgagtcatgagcctccgtaacaactcgctctctggacctattccagatctttctccacttacaaacctcaaatcactcttcctcgaccggaataa 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39212385 aactccgagtcatgagcctccgtaacaactcgctctctggacctattccagatctttctccacttacaaacctcaaatcactcttcctcgaccggaataa 39212286  T
Q  585 tttctccggttcattccctccttccattctcttcctccatagactcatcactctttcactctctcataacaacctcaccggttcacttccggttcagtta 684  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39212285 tttctccggttcattccctccttccattctcttcctccatagactcatcactctttcactctctcataacaacctcactggttcacttccggttcagtta 39212186  T
Q  685 actctcctcgaccgtcttattcttctc 711  Q
    ||||||||||||||||||||| |||||    
T  39212185 actctcctcgaccgtcttattattctc 39212159  T

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