View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7433_low_1 (Length: 872)
Name: NF7433_low_1
Description: NF7433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7433_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 842; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 842; E-Value: 0
Query Start/End: Original strand, 1 - 858
Target Start/End: Original strand, 3017062 - 3017919
Alignment:
| Q |
1 |
taatgctggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggtaagaactgttgcatacatgactacaggttta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3017062 |
taatgctggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggtaagaactgttgcatacatgactacaggtcta |
3017161 |
T |
|
| Q |
101 |
gcattatagcttcggtattttatctttgcatttcttagattttacgttgaacttgaccccacaaaactgacttgtaaggtgaggattacccaaactttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3017162 |
gcattatagcttcggtattttatctttgcatttcttagattttacgttgaacttgaccccacaaaactgacttgtaaggtgaggattacccaaactttgt |
3017261 |
T |
|
| Q |
201 |
aagcaatgtttagatgtgggacttgggcattttctcgaatagcaattttttatagtcatacatgatatcatcttaagattcttataccgaagaatctgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3017262 |
aagcaatgtttagatgtgggacttgggcattttctcgaatagcaattttttatagtcatacatgatatcatcttaagattcttataccgaagaatctgct |
3017361 |
T |
|
| Q |
301 |
ttcgaccgattggtggggttggtgttccatatggttatgaattttaatgaactatatcatcattgttcattgtttatgggttgaatttaatatgaatcta |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3017362 |
ttcgaccgattggtagggttggtgttccatatggttatgaattttaatgaactatatcatcattgttcattgtttatgggttgaatttaatatgaatcta |
3017461 |
T |
|
| Q |
401 |
tcactagaagctgcagtaattgtaattgttgttgttgtctgtagtgaatgcaaaatgtgtgaacatgcttcttatcaactatgtttgaaactttcagaga |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
3017462 |
tcactagaagctgcagtaattgtaattgttgttgttgtctgtagtgaatgcaaaatgtgtgaacatgcttcttatcagctatgtttgaaactttcagaga |
3017561 |
T |
|
| Q |
501 |
atatcatccagaaattgttttctcgtccatggaagccataatggcccgtgttatcgaggaaagtgacgatatatctctcggcttactctatccaatctta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3017562 |
atatcatccagaaattgttttctcgtccatggaagccataatggcccgtgttattgaggaaagtgacgatatatctctcggcttactctatccaatctta |
3017661 |
T |
|
| Q |
601 |
gattgtgtaaagaaagacaataaggttggtgtttggaaatttaatctcattctttttaatagattgtgattatgaaactgaaacttatttcatttcatta |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3017662 |
gattgtgtaaagaaagacaataaggttggtgtttggaaatttaatctcattctttttaatagattgtgattatgaaactgaaacttatttcatttcatta |
3017761 |
T |
|
| Q |
701 |
tggattgcttataattgtcgtgatcactatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaaca |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3017762 |
tggattgcttataattgtcgtgatcactatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaaca |
3017861 |
T |
|
| Q |
801 |
aagcttataatacctatttgcggcatgctgtgaatatgttgggtactatggttgatgt |
858 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3017862 |
aagcttataatacctatttgcggcatgctgtgaatatgttgggtactatggttgatgt |
3017919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 614 - 856
Target Start/End: Original strand, 3020776 - 3021018
Alignment:
| Q |
614 |
aagacaataaggttggtgtttggaaatttaatctcattctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttata |
713 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3020776 |
aagacaataagggtggagtttggaaatttaatctcattctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttata |
3020875 |
T |
|
| Q |
714 |
attgtcgtgatcactatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagcttataatac |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
3020876 |
attgtcgtgatcactatcattatgattcaggttgtttcaccaaatgctcgaaagttgggggaaagtgttcttcaaaagtgtgcaacaaggcttataatac |
3020975 |
T |
|
| Q |
814 |
ctatttgcggcatgctgtgaatatgttgggtactatggttgat |
856 |
Q |
| |
|
|| ||||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
3020976 |
ctgtttgcggtatgttgtgaatatgttgggtactatggttgat |
3021018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 448 - 585
Target Start/End: Original strand, 3020639 - 3020776
Alignment:
| Q |
448 |
atgcaaaatgtgtgaacatgcttcttatcaactatgtttgaaactttcagagaatatcatccagaaattgttttctcgtccatggaagccataatggccc |
547 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |
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|
| T |
3020639 |
atgcaaaatatgtgaacatgcttcttatcagctctgtttgaaactttcagagaacatcatccagaaattgttttctcgtccatggaaaccataatgatcc |
3020738 |
T |
|
| Q |
548 |
gtgttatcgaggaaagtgacgatatatctctcggctta |
585 |
Q |
| |
|
||||| | ||||||||||||||||||||||| |||||| |
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|
| T |
3020739 |
gtgtttttgaggaaagtgacgatatatctcttggctta |
3020776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 448 - 807
Target Start/End: Original strand, 3033474 - 3033830
Alignment:
| Q |
448 |
atgcaaaatgtgtgaacatgcttcttatcaactatgtttgaaactttcagagaatatcatccagaaattgttttctcgtccatggaagccataatggccc |
547 |
Q |
| |
|
|||||||||||||||||||| |||| | || || |||||||||||||||| ||| |||||||||| | ||||||||||||||||||| | |||||| || |
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|
| T |
3033474 |
atgcaaaatgtgtgaacatggttctaagcatctctgtttgaaactttcagggaacatcatccagataatgttttctcgtccatggaaactataatgatcc |
3033573 |
T |
|
| Q |
548 |
gtgttatcgaggaaagtgacgatatatctctcggcttactctatccaatcttagattgtgtaaagaaagacaataaggttggtgtttggaa--atttaat |
645 |
Q |
| |
|
| | || |||||||| || |||||| | |||||||| |||||||||||| ||||||||||||||||| ||||||||||||| || ||| | |
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|
| T |
3033574 |
tctgtctagaagaaagtgaagaaatatctgatgacttactctctccaatcttagacagtgtaaagaaagacaatgaggttggtgtttgtaattttttcgt |
3033673 |
T |
|
| Q |
646 |
ctcattctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttataattgtcgtgatcactatcattatgattcaggt |
745 |
Q |
| |
|
|||||||| ||||||| | |||||| | |||||||||| | ||||||||||| ||| |||||||||||| || || |||| |||||||||| |
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|
| T |
3033674 |
ttcattcttgttaataggtcgtgattgttaaactgaaacat-----atttcattatgaatttcttataattgtcatggctgctgtcatcatgattcagga |
3033768 |
T |
|
| Q |
746 |
ggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagctta |
807 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| || ||| ||| |||||||||| ||||| |
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|
| T |
3033769 |
ggttttgccaattgctcgaaagttgggggaaagagtccttgaaagttgtgcaacaaggctta |
3033830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 202 - 333
Target Start/End: Original strand, 3020414 - 3020545
Alignment:
| Q |
202 |
agcaatgtttagatgtgggacttgggcattttctcgaatagcaattttttatagtcatacatgatatcatcttaagattcttataccgaagaatctgctt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||| ||||||||||||| |
|
|
| T |
3020414 |
agcaatgtttagatgtgggacttgggcattttctcgaatagcaattttttatagtcatgcatgatatcatcataagatgcttgtactgaagaatctgctt |
3020513 |
T |
|
| Q |
302 |
tcgaccgattggtggggttggtgttccatatg |
333 |
Q |
| |
|
| |||| | |||| ||| | |||||||||||| |
|
|
| T |
3020514 |
ttgaccaaatggtagggctagtgttccatatg |
3020545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3032798 - 3032867
Alignment:
| Q |
1 |
taatgctggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggta |
70 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
3032798 |
taatgctggatcttgaatgcgatgccctcattttggagatgtttcagcatttcttgaagacaataaggta |
3032867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 375 - 429
Target Start/End: Original strand, 3020542 - 3020596
Alignment:
| Q |
375 |
tatgggttgaatttaatatgaatctatcactagaagctgcagtaattgtaattgt |
429 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3020542 |
tatgagttgaatttaatatgaatctttcactagaagctgcagtaattgtaattgt |
3020596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 48969923 - 48969855
Alignment:
| Q |
1 |
taatgctggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggt |
69 |
Q |
| |
|
||||| |||| ||||| |||||||| || |||||||||||||||| || ||| |||||||| ||||||| |
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|
| T |
48969923 |
taatgttggaccttgattgtgatgcgctgattttggagatgtttcagcattttttgaagaccataaggt |
48969855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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