View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7433_low_15 (Length: 254)
Name: NF7433_low_15
Description: NF7433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7433_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 38861691 - 38861467
Alignment:
| Q |
13 |
aatatgcacaatgggggttagtacattatagactaaggcaaaccagttattgatcccgtttaacaaacaccaagccattgtaatattaaacaagagaagg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38861691 |
aatatgcacaatgggggttagtacattatagactaaggcaaaccagttattgatcccgtttaacaaacaccaagccattgtaatattaaacaagagaagg |
38861592 |
T |
|
| Q |
113 |
atataacattataagattcagatttcatcaaaatgttcatctgcagaaaacagcctggactagagtgaaaccagagacacaaacttgataacaaatttga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38861591 |
atataacattataagattcagatttcatcaaaatgttcatctgcagaaaacagcctggactagagtgaaaccagagacacaaacttgataacaaatttga |
38861492 |
T |
|
| Q |
213 |
ccaagacaaaccagttattgatccc |
237 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38861491 |
ccaagacaaaccagttattgatccc |
38861467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 38861485 - 38861369
Alignment:
| Q |
51 |
caaaccagttattgatcccgtttaacaaacaccaagccattgtaat-------attaaacaagagaaggatataacattataagattcagatttcatcaa |
143 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
38861485 |
caaaccagttattgatcccctttaacaaacaccaagtcattgtaatttgcaacattaaacaagagaaggatagaacattataggattcagatttcatcaa |
38861386 |
T |
|
| Q |
144 |
aatgttcatctgcagaa |
160 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38861385 |
aatgttcatctgcagaa |
38861369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University