View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7433_low_19 (Length: 232)
Name: NF7433_low_19
Description: NF7433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7433_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 4 - 211
Target Start/End: Original strand, 3146680 - 3146887
Alignment:
| Q |
4 |
ttgtcagtatgtattcttttaataccatttccaaattgcgtttgtatcgtattataaaattgattaaataattttggtacttctgacttattaatcatca |
103 |
Q |
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| T |
3146680 |
ttgtcagtatgcattcttttaataccatttccaaattgtgtttgtaccgtattataaaattgaataaataattttggtacttctgacttattaatcatca |
3146779 |
T |
|
| Q |
104 |
agaaagtccaagttactctagaacaatcatcaataaaataaacaaaccatctcgtactagaaatattcgaaacaacggctggttcccaaacataaaaatg |
203 |
Q |
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| T |
3146780 |
agaaaatccaagttactcgaaaacaatcatcaataaaataaacaaaccatctcgcactagaaatattcgaaacaacggctggttcccaaacataaaaatg |
3146879 |
T |
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| Q |
204 |
aataagat |
211 |
Q |
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|||||||| |
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| T |
3146880 |
aataagat |
3146887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 25479762 - 25479638
Alignment:
| Q |
15 |
tattcttttaataccatttccaaattgcgtttgtatcgtattataaaattgattaaataattttggtacttctgacttattaatcatcaagaaagtccaa |
114 |
Q |
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|||||||||| ||| |||||||||| ||||||| | ||| |||||||||| |||| ||||||| ||| ||| | |||||| ||||||| || ||||| |
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| T |
25479762 |
tattcttttagtacgttttccaaattatgtttgtaccatat-ataaaattgaataaagaattttgatacatctaatttattattcatcaaagaaatccaa |
25479664 |
T |
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| Q |
115 |
gttactctagaacaatcatcaataaa |
140 |
Q |
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| T |
25479663 |
tttactcaataacaatcatcaataaa |
25479638 |
T |
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