View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7433_low_4 (Length: 481)
Name: NF7433_low_4
Description: NF7433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7433_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 6 - 467
Target Start/End: Complemental strand, 19820139 - 19819676
Alignment:
| Q |
6 |
tttggtgttgctgcacagcttacaaggactatgtcaaagcgcaatacggtagttgttgtgtttaagattgttttaatattattgtgtcatataatatatg |
105 |
Q |
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| T |
19820139 |
tttggtgttgctgcacagcttacaaggactatgtcaaagcgcaatacggtagttgttgtgtttaagattgttttaatattattgtgtcatataatatatg |
19820040 |
T |
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| Q |
106 |
aagtgagaagtaggaacatggttttaaaatcataaatgacaaagatatggtgttgatgtaagattgttaattttatattaaacagtgaagtcaggaacaa |
205 |
Q |
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| T |
19820039 |
aagtgagaagtaggaacatggttttaaaatcataaatgacaaagatatggtgttgatgtaagattgttaattttatattaaacagtgaagtcaggaacaa |
19819940 |
T |
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| Q |
206 |
actt--cttacctcattgtattccaattttgaaacagatactaaattggnnnnnnngaaaataagtgccattaaatgctcgtcctattgggggacatatc |
303 |
Q |
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| T |
19819939 |
acttttcttacctcatcgtattccaattttgaaacagatactaaattggaactaaagaaaataagtgccattaaatgctcgtcctattgggggacatatc |
19819840 |
T |
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| Q |
304 |
tttatgttttttgtttgaataaacttttcaggttttaaatgaaataaaacatgcatccaacttccttttagctatcgaacatctgtccctgtacatttat |
403 |
Q |
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| T |
19819839 |
tttatgttttttgtttgaataaacttttcaggttttaaatgaaataaaacatgcatccaacttccttttagctatcgaacatctgtccctgtacatttat |
19819740 |
T |
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| Q |
404 |
atatttatgtgtttgtttattgagattcatgttcttttcatccattaactgagattgagatgat |
467 |
Q |
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| T |
19819739 |
atatttatgtgtttgtttattgagattcatgttcttttcatccattaactgagattgagatgat |
19819676 |
T |
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