View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7433_low_6 (Length: 478)
Name: NF7433_low_6
Description: NF7433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7433_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 21 - 469
Target Start/End: Complemental strand, 1131664 - 1131216
Alignment:
| Q |
21 |
acagtagcggcggcgccgccaccaccttcctctcgagaaggttgcaccgatcagctacttctattctctccctgtctttcttacgtttcgtctcctccaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1131664 |
acagtagcggcggcgccgccaccaccttcctctcgagaaggttgcaccgatcagctacttctattctctccctgtctttcttacgtttcgtctcctccaa |
1131565 |
T |
|
| Q |
121 |
acaacctcacggagactgcttccaccaaatgctgcgacgctttctcgtcgacgttcttgccgaactctctctgtttctgttatctcctccgtgataatca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1131564 |
acaacctcacggagactgcttccaccaaatgctgcgacgctttctcgtcgacgttcttgccgaactctctctgtttctgttatctcctccgtgataatca |
1131465 |
T |
|
| Q |
221 |
cattctcggcttccctctcaactccacaaggcttcaatcgctctcctcgctatgtgtctcgcctccaccaactacttcttctctcaatgttctttgcgca |
320 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1131464 |
cattctcggcttccctctcaactccacaaggattcaatcgctttcctcgctatgtgtctcacctccaccaactacttcttctctcaatgttctttgcgca |
1131365 |
T |
|
| Q |
321 |
ggttcgttctttattctttcttttcaaagattctttagaatttagatacaaataatcaaatacagagagattaattgaattgttgttgtttgattcacat |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1131364 |
ggttcgttctttattctttcttttcaaagattctttagaatttagatacaaataatcaaatacagagagattaattgaattgttgttgtttgattcacat |
1131265 |
T |
|
| Q |
421 |
tgttacagaatcacggactcttcctcctctcggcagcgcagatattctt |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1131264 |
tgttacagaatcacggactcttcctcctctcggcagcgcagatattctt |
1131216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 21 - 469
Target Start/End: Original strand, 22970847 - 22971312
Alignment:
| Q |
21 |
acagtagcggcggcgccgccaccaccttcctctcgagaaggttgcaccgatcagctacttctattctctccctgtctttcttacgtttcgtctcctccaa |
120 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22970847 |
acagtagcggtggcgccgccaccaccttcctctcgagaaggttgcaccgatcagctacttctattctctccctgtctttcttacgtttcgtctcctccaa |
22970946 |
T |
|
| Q |
121 |
acaacctcacggagactgcttccaccaaatgctgcgacgctttctcgtcgacgttcttgccgaactctctctgtttctgttatctcctccgtgataatca |
220 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22970947 |
acaacctcacggagactgcttccaccaaatgctgcgacgctttctggtcgacgttcgtgccgaactctctctgtttctgttatctcctccgtgataatca |
22971046 |
T |
|
| Q |
221 |
cattctcggcttccctctcaactccacaaggcttcaatcgctctcctcgctatgtgtctcgcctccaccaactacttcttctctcaatgttctttgcgca |
320 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
22971047 |
cattctcggcttccctctcaactccacaaggcttcaatcgctctcctcgctatgtgtctcacctccaccaactacttcttctttcaatgttctttgcgca |
22971146 |
T |
|
| Q |
321 |
ggttcgttctttattctttcttttcaaagattctttagaatttagatacaaataatcaaatacagagagatt-----------------aattgaattgt |
403 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
22971147 |
ggttcgttctttgttctttcttttcaaagattttttagaatttagatacaaataatcaaataaagagagattaattgaattgaaattgaaattgaattgt |
22971246 |
T |
|
| Q |
404 |
tgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcagatattctt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22971247 |
tgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcagatattctt |
22971312 |
T |
|
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