View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7434_high_2 (Length: 246)
Name: NF7434_high_2
Description: NF7434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7434_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 28973114 - 28972897
Alignment:
| Q |
16 |
atggggtcagctacataaataaaacaaacatcccactaaaaacaagttgaatgaagtaaa-tgacgtaaaaatcactttttgattataccaca-----tc |
109 |
Q |
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| T |
28973114 |
atggggtcagctacataaataaaacaaacatcccactaaaaacaagttcaatgcagtaaaatgacgtaaaaatcacttttttattataccacaattaatc |
28973015 |
T |
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| Q |
110 |
aaaaatcattnnnnnnnnnncatgtcttaacgcctgttcttgtacaatcattgttattgagaaacaacattaggaaataaaaatcacatcaactaatttc |
209 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28973014 |
aaaaatcattaaaaaaaa--catgtcttaacgcctgttcttgtacaatcattgttattgagaaacaacattaggaaataaaaatcacatcaactaatttc |
28972917 |
T |
|
| Q |
210 |
ctgaatcccaaacataaatc |
229 |
Q |
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|||||||||||||||||||| |
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| T |
28972916 |
ctgaatcccaaacataaatc |
28972897 |
T |
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