View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7434_low_4 (Length: 243)

Name: NF7434_low_4
Description: NF7434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7434_low_4
NF7434_low_4
[»] chr4 (6 HSPs)
chr4 (1-227)||(18522149-18522375)
chr4 (5-222)||(37050050-37050267)
chr4 (87-215)||(16832076-16832204)
chr4 (9-222)||(24239701-24239914)
chr4 (40-117)||(7492180-7492257)
chr4 (40-117)||(7500231-7500308)
[»] chr6 (3 HSPs)
chr6 (5-222)||(25167892-25168109)
chr6 (2-219)||(3949386-3949604)
chr6 (144-222)||(4263362-4263440)
[»] chr1 (4 HSPs)
chr1 (2-222)||(13061814-13062033)
chr1 (4-197)||(14344129-14344320)
chr1 (6-138)||(44163616-44163748)
chr1 (142-222)||(49491871-49491951)
[»] chr3 (4 HSPs)
chr3 (2-219)||(29346850-29347066)
chr3 (2-218)||(35526413-35526628)
chr3 (13-118)||(49106899-49107005)
chr3 (179-222)||(16893126-16893169)
[»] chr5 (5 HSPs)
chr5 (4-212)||(788135-788336)
chr5 (1-173)||(35811227-35811397)
chr5 (1-222)||(32278560-32278777)
chr5 (4-169)||(37307054-37307219)
chr5 (2-222)||(19215431-19215649)
[»] chr7 (3 HSPs)
chr7 (1-202)||(34547949-34548150)
chr7 (10-128)||(7543966-7544081)
chr7 (9-64)||(29132307-29132362)
[»] chr2 (5 HSPs)
chr2 (40-222)||(31092365-31092547)
chr2 (54-222)||(37344668-37344836)
chr2 (4-222)||(14296114-14296329)
chr2 (144-219)||(18693153-18693228)
chr2 (150-222)||(18811704-18811776)
[»] chr8 (2 HSPs)
chr8 (40-219)||(29369155-29369334)
chr8 (2-80)||(3801156-3801233)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 18522149 - 18522375
Alignment:
Q  1 tcctaaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctat 100  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  18522149 tcctaaggaaagaggtttcaaagacaaccaatggacataaaaactagacaaattatgaccattcttggccaaacaaaagctaatagactatactctctat 18522248  T
Q  101 gaaaatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagc 200  Q
    ||||||||||||||||||||| |||||||  ||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  18522249 gaaaatttgaacaaaagtattcatattcccgaatattctgctgcaactgaaccaactattctatatctgccaagtcgactttggaggcatccttttgagc 18522348  T
Q  201 acggatcctcattccggctgagaacgt 227  Q
    ||||||||||||||||||||| |||||    
T  18522349 acggatcctcattccggctgacaacgt 18522375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 37050267 - 37050050
Alignment:
Q  5 aaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaat-tatgaccattcttggccaaacaacagccaatagactatcctctctatgaa 103  Q
    |||||| ||||| |||||||||||||||| ||| ||||| ||| ||||  ||||||||| ||||||||||||||  | || ||||||  |||||||||||    
T  37050267 aaggaacgaggtatcaaagacaaccaatgaaca-aaaaactagtcaaaagtatgaccatacttggccaaacaacgactaaaagactactctctctatgaa 37050169  T
Q  104 aatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagcacg 203  Q
    ||||||||||||||||||| |||||| | |||||||| | ||||||||||||||||| | ||||| ||||| || ||||||||| | ||||||| |||||    
T  37050168 aatttgaacaaaagtattggtattcccatatattctgttgcaattgaaccaactattttgtatctctcaaagcggctttggaggtacccttttgggcacg 37050069  T
Q  204 gatcctcattccggctgag 222  Q
      |||||||||||||||||    
T  37050068 agtcctcattccggctgag 37050050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 16832076 - 16832204
Alignment:
Q  87 actatcctctctatgaaaatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggag 186  Q
    ||||||||||||||||||||||||  |||||||||||||||||||  ||||||| | ||| |||||| |||||| | |||||| |||  |  ||||||||    
T  16832076 actatcctctctatgaaaatttgagtaaaagtattgatattcctagctattctgatgcaaatgaaccgactattatgtatctgccaagacagctttggag 16832175  T
Q  187 gcatccttttgagcacggatcctcattcc 215  Q
    ||| |||||||| ||||  ||||||||||    
T  16832176 gcacccttttgaacacgtgtcctcattcc 16832204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 24239701 - 24239914
Alignment:
Q  9 aaagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatgaaaattt 108  Q
    |||||||| |||||||| |||| |  ||  ||||| ||| || |||||||| |||||||||||||||||    |  |||||| | | |||||||||||||    
T  24239701 aaagaggtatcaaagaccaccattatactgaaaaactagtcatattatgacaattcttggccaaacaactattacaagactaccatttctatgaaaattt 24239800  T
Q  109 gaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaa-atcgactttggaggcatccttttgagcacggatc 207  Q
    |||||||||||||||||||||    ||||||  |  |||||| ||||||||| | |||||| ||| || | |||| |||| | ||||||| |||||| ||    
T  24239801 gaacaaaagtattgatattccctgttattcttttgtaattgagccaactattatgtatctgccaagatag-cttttgaggtacccttttgggcacgggtc 24239899  T
Q  208 ctcattccggctgag 222  Q
    |||||||||||||||    
T  24239900 ctcattccggctgag 24239914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 7492257 - 7492180
Alignment:
Q  40 aaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatgaaaatttgaacaaaag 117  Q
    |||| ||| |||||||| ||||| |||   ||||||||||| || |||||| ||| ||||||||||||||||||||||    
T  7492257 aaaactagtcaaattataaccatacttaagcaaacaacagctaaaagactaccctttctatgaaaatttgaacaaaag 7492180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 7500308 - 7500231
Alignment:
Q  40 aaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatgaaaatttgaacaaaag 117  Q
    |||| ||| |||||| | ||||| |||  |||||||| ||| || |||||| ||||||||||||||||||||||||||    
T  7500308 aaaactagtcaaattgtaaccatacttaaccaaacaagagctaaaagactaccctctctatgaaaatttgaacaaaag 7500231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 25168109 - 25167892
Alignment:
Q  5 aaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaat-tatgaccattcttggccaaacaacagccaatagactatcctctctatgaa 103  Q
    |||||| |||||||||||| ||||||||| ||| ||||| ||| ||||  ||||||||| ||||||||||||||  | || ||||||  || ||||||||    
T  25168109 aaggaacgaggtgtcaaaggcaaccaatgaaca-aaaaactagtcaaaagtatgaccatacttggccaaacaacgactaaaagactactctttctatgaa 25168011  T
Q  104 aatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagcacg 203  Q
    ||||||||||||||||||| |||||| | |||||||| | ||||||||||||||||||| ||||||||||  || ||||||||| | ||||||| ||| |    
T  25168010 aatttgaacaaaagtattggtattcccatatattctgttgcaattgaaccaactattctgtatctgtcaaggcggctttggaggtacccttttgggcatg 25167911  T
Q  204 gatcctcattccggctgag 222  Q
      ||||| |||||||||||    
T  25167910 agtcctctttccggctgag 25167892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 3949604 - 3949386
Alignment:
Q  2 cctaaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaat-tatgaccattcttggccaaacaacagccaatagactatcctctctat 100  Q
    ||||||||| ||||||||||||||||| |||  ||| ||||  ||| ||||  |||||||||||||||||||| |||  |  | ||||||  | |||||     
T  3949604 cctaaggaacgaggtgtcaaagacaactaataaacagaaaagctagtcaaaagtatgaccattcttggccaaataacgactgaaagactactccctctaa 3949505  T
Q  101 gaaaatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagc 200  Q
    |||||||||||||||||||||| |||||  | |||||||| | |||||||| ||||||||||  |||||||||  || ||||||||| | |||| ||| |    
T  3949504 gaaaatttgaacaaaagtattggtattctcagatattctgttgcaattgaatcaactattctgcatctgtcaaggcggctttggaggtacccttctgaac 3949405  T
Q  201 acggatcctcattccggct 219  Q
    |||  ||||||||| ||||    
T  3949404 acgagtcctcattctggct 3949386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 4263362 - 4263440
Alignment:
Q  144 caattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagcacggatcctcattccggctgag 222  Q
    ||||||||||||||||||  |||||| |||  | | |||||||| | |||||||||||||| |||||||||||||||||    
T  4263362 caattgaaccaactattccgtatctgccaagacaattttggaggaacccttttgagcacgggtcctcattccggctgag 4263440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 13061814 - 13062033
Alignment:
Q  2 cctaaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatg 101  Q
    ||||| ||||||||||||||| ||||||| || ||| |||| | || |||| || ||||||||| |||||||||||||| || |||||| ||||||||||    
T  13061814 cctaatgaaagaggtgtcaaatacaaccattgaacagaaaact-agtcaaactacgaccattctaggccaaacaacagctaaaagactaccctctctatg 13061912  T
Q  102 aaaatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagca 201  Q
    |||||||||||||||||||| | ||||| |  ||| ||  | |||||| ||||| |||||| ||| ||||||  || ||||||||| |  ||||| ||||    
T  13061913 aaaatttgaacaaaagtattaacattcccatctatacttttgcaattggaccaattattctgtatttgtcaaggcggctttggaggtactcttttcagca 13062012  T
Q  202 cggatcctcattccggctgag 222  Q
    ||| |||||||| ||||||||    
T  13062013 cgggtcctcatttcggctgag 13062033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 14344320 - 14344129
Alignment:
Q  4 taaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatgaa 103  Q
    ||||||| |||||||||||||||||| ||| ||| ||||| ||  |||| || |||||||||||||||||||||  | || |||| |  |||||||  ||    
T  14344320 taaggaacgaggtgtcaaagacaacccatgaacagaaaaactaatcaaaatacgaccattcttggccaaacaacgactaaaagaccactctctctaaaaa 14344221  T
Q  104 aatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttg 197  Q
    || ||||||||||||||||||||||| | ||||| |  | |||||| |||||||| | | |||||||||| ||||||||||||| | |||||||    
T  14344220 aaattgaacaaaagtattgatattcccagatattttattgcaattg-accaacta-tatgtatctgtcaagtcgactttggaggtacccttttg 14344129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 44163616 - 44163748
Alignment:
Q  6 aggaaagaggtgtcaaagacaaccaatggacataaaaattagac-aaattatgaccattcttggccaaacaacagccaatagactatcctctctatgaaa 104  Q
    ||||| || ||||||||||||  ||| | ||||||||| ||| | ||| |||||||||||||||||||||||| | | | | ||||  ||||||| ||||    
T  44163616 aggaacgatgtgtcaaagacagtcaaagaacataaaaactagtctaaagtatgaccattcttggccaaacaac-gactaaaaactactctctctaagaaa 44163714  T
Q  105 atttgaacaaaagtattgatattcctaaatattc 138  Q
    || ||| ||||||||||| |||||| | ||||||    
T  44163715 atatgatcaaaagtattggtattcccagatattc 44163748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 49491871 - 49491951
Alignment:
Q  142 tacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagcacggatcctcattccggctgag 222  Q
    ||||||||||||||||||||  |||  | |||  | |||||||||| | ||||||| |||||| |||||||||||||||||    
T  49491871 tacaattgaaccaactattcggtatacgccaaggcaactttggaggtacccttttgggcacgggtcctcattccggctgag 49491951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 29347066 - 29346850
Alignment:
Q  2 cctaaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatg 101  Q
    ||||| ||||||||||||||| ||||||| || |||||||| | || |||| |||||||||||  |||||||||||| | || |||||  ||||||||||    
T  29347066 cctaatgaaagaggtgtcaaatacaaccattgaacataaaact-agtcaaactatgaccattccaggccaaacaacaactaaaagactgccctctctatg 29346968  T
Q  102 aaaatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagca 201  Q
    ||||||| |||||||||||||| ||||  |  ||| ||  | |||||| |||||||||| | ||||||||||  || ||||||||| |  |||||| |||    
T  29346967 aaaattttaacaaaagtattgacattctcatctatactcttgcaattggaccaactattatgtatctgtcaaggcggctttggaggtactcttttgtgca 29346868  T
Q  202 cggatcctcattccggct 219  Q
    ||| ||||||||||||||    
T  29346867 cgggtcctcattccggct 29346850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 35526413 - 35526628
Alignment:
Q  2 cctaaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatg 101  Q
    ||||| |||| |||||||||| ||||||| || |||||||| | || ||||||||||||||  |||||| ||||| ||| || ||| |   |||||||||    
T  35526413 cctaatgaaacaggtgtcaaaaacaaccattgtacataaaact-agtcaaattatgaccatgtttggcccaacaatagctaaaagattgcactctctatg 35526511  T
Q  102 aaaatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagca 201  Q
    |||||||||||||||||||| | ||||| | |||||||  | |||||| ||||| |||| |  ||||| |||  || |||||  || | ||||||| |||    
T  35526512 aaaatttgaacaaaagtattaacattcccagatattctattgcaattgcaccaattattttgaatctgccaagacgtctttgttggtacccttttgggca 35526611  T
Q  202 cggatcctcattccggc 218  Q
    ||| |||||||||||||    
T  35526612 cgggtcctcattccggc 35526628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 49106899 - 49107005
Alignment:
Q  13 aggtgtcaaagacaaccaatggacataaaaattagac-aaattatgaccattcttggccaaacaacagccaatagactatcctctctatgaaaatttgaa 111  Q
    ||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||| | ||||||  | || ||||||  ||||||||||||||||| |    
T  49106899 aggtgtcaaagacaaccaatgaacataaaaattagtcaaaagtatgaccattcttggtctaacaacgactaaaagactactctctctatgaaaatttgca 49106998  T
Q  112 caaaagt 118  Q
    || ||||    
T  49106999 cagaagt 49107005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 16893169 - 16893126
Alignment:
Q  179 ctttggaggcatccttttgagcacggatcctcattccggctgag 222  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  16893169 ctttggaggcacccttttgagcacgggtcctcattccggctgag 16893126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 212
Target Start/End: Original strand, 788135 - 788336
Alignment:
Q  4 taaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatgaa 103  Q
    ||||||||||||||||||||||||||| || |   ||||| |||||||||||||||||||| ||||||||| ||||| || |||||| |||||||    |    
T  788135 taaggaaagaggtgtcaaagacaaccattgta---aaaaactagacaaattatgaccattcatggccaaaccacagctaaaagactaccctctct---ga 788228  T
Q  104 aatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagcacg 203  Q
    ||||||||||||||| ||| |||||    |||||||| | |||||||||||| |||||||||| ||||||  || ||||||||| | ||||||| |||||    
T  788229 aatttgaacaaaagt-ttggtattctccgatattctgttgcaattgaaccaattattctatatatgtcaaggcggctttggaggaacccttttgggcacg 788327  T
Q  204 gatcctcat 212  Q
      |||||||    
T  788328 agtcctcat 788336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 35811397 - 35811227
Alignment:
Q  1 tcctaaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctat 100  Q
    |||||||||||||||| ||||| |||| ||  | | | ||||| ||| ||||||||||  |||||||| |||||||| || || |||||| |||||  ||    
T  35811397 tcctaaggaaagaggtatcaaaaacaagcatcgtaaagaaaaactagtcaaattatgattattcttggtcaaacaacggctaaaagactaccctct--at 35811300  T
Q  101 gaaaatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaa 173  Q
    |||||||||||||||||||||| |||||| ||||||| || | ||||||||||||||||| ||||| ||||||    
T  35811299 gaaaatttgaacaaaagtattggtattcccaaatattatgttgcaattgaaccaactattttatatttgtcaa 35811227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32278560 - 32278777
Alignment:
Q  1 tcctaaggaaagaggtgtcaaagacaaccaatggacataaaaattagac-aaattatgaccattcttggccaaacaacagccaatagactatcctctcta 99  Q
    |||||||||| |||||||||||||||||||||| ||| ||||| ||| | ||| ||||||||||||||||||||||||  | || ||||||  |||||||    
T  32278560 tcctaaggaacgaggtgtcaaagacaaccaatgaacagaaaaactagtcaaaagtatgaccattcttggccaaacaacgactaaaagactactctctcta 32278659  T
Q  100 tgaaaatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgag 199  Q
     ||||||| || ||     |||| |||||  | ||||| || | |||||||||| |||||||| ||||||||||  || ||||||||| | ||||||| |    
T  32278660 agaaaattagagca-----attggtattctcatatattttgttgcaattgaacccactattctgtatctgtcaaggcggctttggaggtacccttttggg 32278754  T
Q  200 cacggatcctcattccggctgag 222  Q
     ||| ||| ||||||||||||||    
T  32278755 aacgaatcttcattccggctgag 32278777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 169
Target Start/End: Original strand, 37307054 - 37307219
Alignment:
Q  4 taaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatgaa 103  Q
    |||||||||||||||||||||| | || || ||||||||  ||| || || |||| |||| ||||||||||||| || |  ||||||  |||||| ||||    
T  37307054 taaggaaagaggtgtcaaagaccatcattgtacataaaacctagtcatataatgagcatttttggccaaacaactgctacaagactacactctctgtgaa 37307153  T
Q  104 aatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctg 169  Q
    |||||||||||||||||||||||| | |  ||||||  |  |||||||||||||||| | ||||||    
T  37307154 aatttgaacaaaagtattgatatttccagttattcttttgtaattgaaccaactattatgtatctg 37307219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 19215649 - 19215431
Alignment:
Q  2 cctaaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatg 101  Q
    ||||| |||| |||||||||||||||||| |  ||| |||| | || ||||||||| |  ||||||||||||||||||| || |||||  ||||||| ||    
T  19215649 cctaatgaaataggtgtcaaagacaaccattatacagaaaact-agtcaaattatgtctgttcttggccaaacaacagctaaaagactgccctctctgtg 19215551  T
Q  102 aaaatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagca 201  Q
    |||||||||| | ||||||||| ||||||| | |||||  | |||||  |||||||||||| |||||| |||  |   |||| ||| | ||||||| ||     
T  19215550 aaaatttgaatagaagtattgacattcctagaaattct-atgcaattcgaccaactattctgtatctgccaaggcagttttgaaggtacccttttgggct 19215452  T
Q  202 cggatcctcattccggctgag 222  Q
    ||| ||||||||| |||||||    
T  19215451 cgggtcctcattcgggctgag 19215431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 34548150 - 34547949
Alignment:
Q  1 tcctaaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaat-tatgaccattcttggccaaacaacagccaatagactatcctctcta 99  Q
    ||||||||||  |||||||||||| |||||||  ||||||||||||| ||||  ||||||||||||||||| ||||||  | || ||||||  |||||||    
T  34548150 tcctaaggaacaaggtgtcaaagataaccaata-acataaaaattagtcaaaagtatgaccattcttggcctaacaacgactaaaagactactctctcta 34548052  T
Q  100 tgaaaatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgag 199  Q
    |||||||||| |||||||||||| |||||  | |||||||| | || |||||||||||||||| |||| | ||||  |  |||||||| | |||||||||    
T  34548051 tgaaaatttgcacaaaagtattggtattctcagatattctgttgcacttgaaccaactattctgtatcggccaaagaggttttggaggtacccttttgag 34547952  T
Q  200 cac 202  Q
    |||    
T  34547951 cac 34547949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 7543966 - 7544081
Alignment:
Q  10 aagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatgaaaatttg 109  Q
    ||||||||||||| ||| ||| || ||| |||| | || |||| |||||||||||| |||||||||||||| || |||||  |||||  |||||||||||    
T  7543966 aagaggtgtcaaatacagccactgaacagaaaact-agtcaaactatgaccattctaggccaaacaacagctaaaagactgccctct--atgaaaatttg 7544062  T
Q  110 aacaaaagtattgatattc 128  Q
    |||||||||||||| ||||    
T  7544063 aacaaaagtattgacattc 7544081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 29132307 - 29132362
Alignment:
Q  9 aaagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattc 64  Q
    ||||||||||||||||| |||| || ||||||||| ||| ||||||||||||||||    
T  29132307 aaagaggtgtcaaagacgaccattgtacataaaaactagtcaaattatgaccattc 29132362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 31092547 - 31092365
Alignment:
Q  40 aaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatgaaaatttgaacaaaagtattgatattcctaaatattct 139  Q
    |||| ||| |||||||| |||||  ||  |||||||||||| || |||||| |||||||||||||||||||||||||| |||||  ||||   |||||||    
T  31092547 aaaactagtcaaattataaccatatttaaccaaacaacagctaaaagactaccctctctatgaaaatttgaacaaaagcattgacgttcccggatattct 31092448  T
Q  140 gctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagcacggatcctcattccggctgag 222  Q
      | ||| || |||||||||||| |||||| |||  |||||||||||| | ||||||| |||||  |||||||||||||||||    
T  31092447 aatgcaaatggaccaactattctgtatctggcaagacgactttggaggtacccttttgggcacgagtcctcattccggctgag 31092365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 37344836 - 37344668
Alignment:
Q  54 tatgaccattcttggccaaacaacagccaatagactatcctctctatgaaaatttgaacaaaagtattgatattcctaaatattctgctacaattgaacc 153  Q
    ||||||||||||||||||||||||  | |  ||||||  |||| || |||||||||||||||| ||||| |||||| | ||||| |||| ||| |||| |    
T  37344836 tatgaccattcttggccaaacaacgactagaagactactctctataagaaaatttgaacaaaaatattggtattcccagatattatgctgcaaatgaatc 37344737  T
Q  154 aactattctatatctgtcaaatcgactttggaggcatccttttgagcacggatcctcattccggctgag 222  Q
    ||||||| | ||| ||||||  || ||||||||  | ||||||| ||||| ||||||||||||||||||    
T  37344736 aactattatgtatatgtcaaggcggctttggagatacccttttgggcacgaatcctcattccggctgag 37344668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 14296114 - 14296329
Alignment:
Q  4 taaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatgaa 103  Q
    |||||||||||||||||||||| |||| || |   ||||| ||||||||| ||||||||||||| |||| |||| || |  |||||| |||||  | |||    
T  14296114 taaggaaagaggtgtcaaagaccaccattgcagggaaaaactagacaaataatgaccattcttg-ccaatcaactgctacaagactaccctct--acgaa 14296210  T
Q  104 aatttgaacaaaagtattgatattcctaaatattctgctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagcacg 203  Q
    |||||||||||||||||| ||||||| |  ||||||  | ||||||||||||||||| | |||||| |||  |  ||||||||| | |||||||  ||||    
T  14296211 aatttgaacaaaagtatttatattcccacttattctattgcaattgaaccaactattatgtatctgccaaggcatctttggaggtacccttttggacacg 14296310  T
Q  204 gatcctcattccggctgag 222  Q
      | |||||||||||||||    
T  14296311 agtgctcattccggctgag 14296329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 18693228 - 18693153
Alignment:
Q  144 caattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagcacggatcctcattccggct 219  Q
    ||||||||||||||||| | ||||||||||  | |||||||||| | ||||||  |||| | ||||||||||||||    
T  18693228 caattgaaccaactattttgtatctgtcaagacaactttggaggaacccttttaggcacaggtcctcattccggct 18693153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 18811704 - 18811776
Alignment:
Q  150 aaccaactattctatatctgtcaaatcgactttggaggcatccttttgagcacggatcctcattccggctgag 222  Q
    ||||||||||||| ||||||||||     |||||||||   ||||||| |||||| |||||||||||||||||    
T  18811704 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgag 18811776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 219
Target Start/End: Complemental strand, 29369334 - 29369155
Alignment:
Q  40 aaaattagacaaattatgaccattcttggccaaacaacagccaatagactatcctctctatgaaaatttgaacaaaagtattgatattcctaaatattct 139  Q
    |||| ||| |||||||| ||||| |||  |||||||| ||| || |||||| |||||||||||||||||||||||||| ||||| ||||    |||||||    
T  29369334 aaaactagtcaaattataaccatacttaaccaaacaatagctaaaagactaccctctctatgaaaatttgaacaaaagcattgacattctcggatattct 29369235  T
Q  140 gctacaattgaaccaactattctatatctgtcaaatcgactttggaggcatccttttgagcacggatcctcattccggct 219  Q
      | |||||| |||||||||||| |||||| |||  ||  |||||| | ||||||||| |||||| ||||||||| ||||    
T  29369234 aatgcaattggaccaactattctgtatctgccaaggcggatttggatgtatccttttgggcacgggtcctcattctggct 29369155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 3801233 - 3801156
Alignment:
Q  2 cctaaggaaagaggtgtcaaagacaaccaatggacataaaaattagacaaattatgaccattcttggccaaacaacagc 80  Q
    ||||||||||||||||||||||||||||     |||||||| |  | ||||||||||||||||||||||||||||||||    
T  3801233 cctaaggaaagaggtgtcaaagacaaccgtattacataaaactg-gtcaaattatgaccattcttggccaaacaacagc 3801156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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