View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7435_high_2 (Length: 335)
Name: NF7435_high_2
Description: NF7435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7435_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 6552264 - 6551948
Alignment:
| Q |
1 |
acttatatcagtagacaaagtcataagtatatacaaacaagctctaactatgagtagttataatcacaactgattcatacagacacaaaaaataattaag |
100 |
Q |
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| T |
6552264 |
acttatatcagtagacaaagtcataagtatatacaaacaagctctaactatgagtagttataatcacaactgattcatgcagacacaaaa--taattaag |
6552167 |
T |
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| Q |
101 |
actaagtttcaatgaggaaataaaaatgtggcatccgacctttggaataggataatgaatgtcgaatttcttgcggccgaagagtctattattgagtgct |
200 |
Q |
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| T |
6552166 |
actaagtttcaatgaggaaataaaaatgtggcatccgacctttggaataggataatgaatgtcgaacttcttgcggccgaagagtctattattgagtgct |
6552067 |
T |
|
| Q |
201 |
ctcattgcattttgggcagctctaatatcataatatgatatcatagcactcccttgatgcttgcaagttctatcaaaagtgtgaatatcaccaaattgct |
300 |
Q |
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| T |
6552066 |
ctcattgcattttgggcagctctaatatcataatatgatatcatagcactcccttgatgcttgcaagttctatcaaaagtgtgaatatcaccaaattgct |
6551967 |
T |
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| Q |
301 |
tcaaaaagatgaagaaaat |
319 |
Q |
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| T |
6551966 |
tcaaagagatgaagaaaat |
6551948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 105 - 319
Target Start/End: Original strand, 49060770 - 49060983
Alignment:
| Q |
105 |
agtttcaatgaggaaataaaaatgtggcatccgacctttggaataggataatgaatgtcgaatttcttgcggccgaagagtctattattgagtgctctca |
204 |
Q |
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|||||||||||| || |||||||| ||||| |||||||| || | |||||||||||| |||||| ||| || ||||||| ||| | ||||||||||| |
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| T |
49060770 |
agtttcaatgag-aattaaaaatgcagcatcgaacctttggtatcgaataatgaatgtcaaatttcctgcagctgaagagttgattctggagtgctctca |
49060868 |
T |
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| Q |
205 |
ttgcattttgggcagctctaatatcataatatgatatcatagcactcccttgatgcttgcaagttctatcaaaagtgtgaatatcaccaaattgcttcaa |
304 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |
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| T |
49060869 |
ttgctttttgggcagctctcatatcataatatgatatcatagcattcccttgatgcttgcaatctctatcaaaagtgtcgatatctccaaattgcttcaa |
49060968 |
T |
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| Q |
305 |
aaagatgaagaaaat |
319 |
Q |
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| T |
49060969 |
aaagaagaagaaaat |
49060983 |
T |
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