View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7435_low_1 (Length: 416)
Name: NF7435_low_1
Description: NF7435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7435_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 9 - 401
Target Start/End: Complemental strand, 42163068 - 42162676
Alignment:
| Q |
9 |
tggtggtggatagcgaaggaaggtgtgctgctgcaacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgc |
108 |
Q |
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| T |
42163068 |
tggtggtggacagcgaaggaaggtgtgctgctgcaacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgc |
42162969 |
T |
|
| Q |
109 |
tggaacgtacgcatgtgaagtgtgtggagtttcttgcactggtgaaggggaggcaatcatacgtggcactcttgcgcgtgaggtggcagcagttatggag |
208 |
Q |
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| T |
42162968 |
tggaacgtacgcatgtgaagtgtgtggagtttcttgcactggtgaaggggaggcaatcatacgtggcactcttgcgcgtgaggtggcagcagttatggag |
42162869 |
T |
|
| Q |
209 |
tacaaaggttttggccttcaagaggccgtggatttcgttatcaaacatcgtcttgacgaagggtttgctggtcttattgctgtgtctagcaagggtgaag |
308 |
Q |
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| T |
42162868 |
tacaaaggttttggccttcaagaggccgtggatttcgttatcaaacatcgtcttgacaaagggtttgccggtcttattgctgtgtctagcaagggtgaag |
42162769 |
T |
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| Q |
309 |
tggcttatggatttaattgtaatgggatgtttagaggtgttgctactgaggatgggctcaaggaggtgggaatatggaaatgatagtaataat |
401 |
Q |
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| T |
42162768 |
tggcttatggatttaattgtaatgggatgtttagaggtgttgctactgaggatgggctcaaggaggtgggaatatggaaatgatagtaataat |
42162676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 381
Target Start/End: Complemental strand, 5479681 - 5479323
Alignment:
| Q |
23 |
gaaggaaggtgtgctgctgcaacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaacgtacgcat |
122 |
Q |
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| T |
5479681 |
gaaggaagatgtgctgctgccacgtcaacaggcgggctaatgaacaagatgattggtcggattggtgactcacctttgataggagctgggacctacgcgt |
5479582 |
T |
|
| Q |
123 |
gtgaagtgtgtggagtttcttgcactggtgaaggggaggcaatcatacgtggcactcttgcgcgtgaggtggcagcagttatggagtacaaaggttttgg |
222 |
Q |
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| T |
5479581 |
gtaacctagctggcgtatcatgcaccggtgaaggcgaggctatcatacgtggcactttggcgcgtgaggtgtcggctgtgatggaatacaaaggtcttgg |
5479482 |
T |
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| Q |
223 |
ccttcaagaggccgtggatttcgttatcaaacatcgtcttgacgaagggtttgctggtcttattgctgtgtctagcaagggtgaagtggcttatggattt |
322 |
Q |
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| T |
5479481 |
tcttcaagaagcagtggatttcgtcattaagaatcgtttggatgaaggatatgctggactcattgctgtttctagtaaaggagaagttgcttatggattt |
5479382 |
T |
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| Q |
323 |
aattgtaatgggatgtttagaggtgttgctactgaggatgggctcaaggaggtgggaat |
381 |
Q |
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|| || ||||| |||||||| ||| |||| |||||||||| ||| |||||| ||||| |
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| T |
5479381 |
aactgcaatggcatgtttaggggttgtgcttctgaggatggattcatggaggttggaat |
5479323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 391
Target Start/End: Original strand, 47171177 - 47171559
Alignment:
| Q |
9 |
tggtggtggatagcgaaggaaggtgtgctgctgcaacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgc |
108 |
Q |
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| T |
47171177 |
tggtggtggacagtcaaggaagatgtgctgctgcaacctcaactggagggctaatgaacaaaatgagtggtcgaattggtgattcacctctcattggtgc |
47171276 |
T |
|
| Q |
109 |
tggaacgtacgcatgtgaagtgtgtggagtttcttgcactggtgaaggggaggcaatcatacgtggcactcttgcgcgtgaggtggcagcagttatggag |
208 |
Q |
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| T |
47171277 |
tggaacttatgcatgtgaagtgtgtggagtttcatgcactggtgaaggtgaagctatcattcgtggcactctcgcacgtgaagtggctgcagttatggag |
47171376 |
T |
|
| Q |
209 |
tacaaaggttttggccttcaagaggccgtggatttcgttatcaaacatcgtcttgacgaagggtttgctggtcttattgctgtgtctagcaagggtgaag |
308 |
Q |
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|||||||| | || |||||| | || |||||||| || || || |||||||||| ||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
47171377 |
tacaaaggctatgaacttcaacaagctgtggattttgtgattaaggatcgtcttgatgaagggtttgctggtcttattgctgtgtccaacaagggtgaag |
47171476 |
T |
|
| Q |
309 |
tggcttatggatttaattgtaatgggatgtttagaggtgttgctactgaggatgggctcaaggaggtgggaatatggaaatga |
391 |
Q |
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| T |
47171477 |
tggcttatgggttcaattgtaatggaatgtttaggggctgtgctactgagaatgggttcatggaggtgggaatttgggaatga |
47171559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 45737249 - 45737174
Alignment:
| Q |
39 |
ctgcaacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaac |
114 |
Q |
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| T |
45737249 |
ctgcaacatcaaccggtggattagtgaacaaaatggttggtcgaattggcgacacgccactcataggtgctggaac |
45737174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 45731917 - 45731844
Alignment:
| Q |
41 |
gcaacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaac |
114 |
Q |
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| T |
45731917 |
gcaacatcaactggtggattagtgaacaaaatggttggtcgaattggtgacacgccactcataggtgctggaac |
45731844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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