View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7435_low_4 (Length: 263)

Name: NF7435_low_4
Description: NF7435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7435_low_4
NF7435_low_4
[»] chr8 (7 HSPs)
chr8 (4-224)||(21838365-21838574)
chr8 (2-205)||(18565420-18565623)
chr8 (26-208)||(23433430-23433611)
chr8 (14-112)||(20267804-20267902)
chr8 (14-112)||(21054433-21054531)
chr8 (148-219)||(5825438-5825508)
chr8 (220-255)||(21932145-21932180)
[»] chr2 (9 HSPs)
chr2 (2-219)||(16152763-16152977)
chr2 (46-208)||(8685098-8685259)
chr2 (220-255)||(25188676-25188711)
chr2 (148-202)||(21823151-21823205)
chr2 (148-202)||(21824011-21824065)
chr2 (42-83)||(19539955-19539995)
chr2 (2-71)||(26653973-26654041)
chr2 (42-82)||(28551503-28551543)
chr2 (42-82)||(40781954-40781993)
[»] chr6 (6 HSPs)
chr6 (4-171)||(17206386-17206553)
chr6 (2-205)||(34659417-34659619)
chr6 (13-80)||(19730922-19730989)
chr6 (220-255)||(32543537-32543572)
chr6 (42-80)||(27167296-27167334)
chr6 (167-220)||(17208577-17208630)
[»] chr5 (6 HSPs)
chr5 (13-220)||(22747870-22748075)
chr5 (92-205)||(19570120-19570233)
chr5 (42-81)||(643259-643297)
chr5 (148-214)||(16525323-16525389)
chr5 (42-83)||(23413531-23413571)
chr5 (44-81)||(24163160-24163197)
[»] chr1 (3 HSPs)
chr1 (2-167)||(12439759-12439923)
chr1 (149-220)||(9757040-9757110)
chr1 (220-253)||(29215074-29215107)
[»] chr4 (2 HSPs)
chr4 (2-205)||(22317161-22317363)
chr4 (125-220)||(39981056-39981151)
[»] chr3 (9 HSPs)
chr3 (86-216)||(11830012-11830146)
chr3 (2-196)||(10878290-10878483)
chr3 (124-216)||(13178367-13178459)
chr3 (148-205)||(9323157-9323213)
chr3 (14-81)||(8711824-8711891)
chr3 (14-81)||(9063711-9063778)
chr3 (55-99)||(46797017-46797062)
chr3 (26-66)||(20747257-20747297)
chr3 (42-82)||(46350484-46350524)
[»] chr7 (3 HSPs)
chr7 (2-75)||(19143409-19143482)
chr7 (2-75)||(20742808-20742881)
chr7 (55-99)||(22579807-22579851)
[»] scaffold0062 (2 HSPs)
scaffold0062 (14-81)||(1129-1196)
scaffold0062 (125-224)||(1212-1311)
[»] scaffold0084 (2 HSPs)
scaffold0084 (2-75)||(18067-18140)
scaffold0084 (2-69)||(30603-30670)
[»] scaffold0711 (1 HSPs)
scaffold0711 (2-81)||(2227-2306)
[»] scaffold0211 (1 HSPs)
scaffold0211 (2-81)||(25175-25254)
[»] scaffold0004 (1 HSPs)
scaffold0004 (2-73)||(382238-382309)
[»] scaffold0002 (1 HSPs)
scaffold0002 (124-216)||(128529-128621)
[»] scaffold1294 (1 HSPs)
scaffold1294 (220-255)||(2045-2080)
[»] scaffold0300 (1 HSPs)
scaffold0300 (42-81)||(11563-11602)
[»] scaffold0022 (1 HSPs)
scaffold0022 (222-255)||(158424-158457)
[»] scaffold0251 (1 HSPs)
scaffold0251 (220-256)||(7106-7142)
[»] scaffold0176 (1 HSPs)
scaffold0176 (42-82)||(8699-8738)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 21838365 - 21838574
Alignment:
Q  4 aatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaaggcttaagcacaactgatta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  21838365 aatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaagccttaagcacaactgatca 21838464  T
Q  104 agacttcctactctattacactacctaaatatttcttgctccaagacaactccaagagaattccctttgcataagcacagctgcttaagactttcccttg 203  Q
    ||||||||||||||||||||||||||||||| ||||||           |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21838465 agacttcctactctattacactacctaaatagttcttg-----------ctccaagagaattccctttgcataagcacaactgcttaagactttcccttg 21838553  T
Q  204 cttaatcacaactgactcaga 224  Q
    |||||||||||||||||||||    
T  21838554 cttaatcacaactgactcaga 21838574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 18565420 - 18565623
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaaggcttaagcacaactgat 101  Q
    ||||||||| |||||||||| || ||||||| | || |  |||||||||||  ||||||||||||||||||||||||||  | ||||||||||||| | |    
T  18565420 ataatcactatggattacaacttgctcaaggacactaccaagagacttctctttgctcaagcacaactgcaagagacttttatgcttaagcacaaccgct 18565519  T
Q  102 taagacttcctactctattacactacctaaatatttcttgctccaagacaactccaagagaattccctttgcataagcacagctgcttaagactttccct 201  Q
    || ||  |||| |||||  |||||||||||| | ||||||||| | |||||||||||| || |||||||||||||||  || ||||||||||||| ||||    
T  18565520 tatgatctcctgctctaagacactacctaaagacttcttgctcaaggacaactccaagcgacttccctttgcataagagcaactgcttaagacttcccct 18565619  T
Q  202 tgct 205  Q
    ||||    
T  18565620 tgct 18565623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 23433611 - 23433430
Alignment:
Q  26 ctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaaggcttaagcacaactgattaagacttcctactctattacact 125  Q
    ||||||| ||||||  ||| |||||||  |||| || ||||| ||||||||||| | |  |||||||||| ||| |||||||||  | |||||  |||||    
T  23433611 ctcaaggactcttccaagaaacttctctttgcttaaccacaattgcaagagactcctatacttaagcacacctgcttaagactta-tgctctaggacact 23433513  T
Q  126 acctaaatatttcttgctccaagacaactccaagagaattccctttgcataagcacagctgcttaagactttcccttgcttaa 208  Q
    ||||||| | ||| | ||| | ||||||||||| | | |||| ||||| |||||||| |||||||||||||||||||| ||||    
T  23433512 acctaaagacttccttctcaaggacaactccaataaacttccatttgcttaagcacaactgcttaagactttcccttgattaa 23433430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 20267902 - 20267804
Alignment:
Q  14 gattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaaggcttaagcacaactgattaagacttcct 112  Q
    ||||||||||| ||||||| | ||||  |||||||||||| || |||||| ||||||||||||| ||| | ||||||  |||||||  ||||| |||||    
T  20267902 gattacaaattactcaaggacacttccaagagacttctcaatgttcaagcccaactgcaagagatttctatgcttaaatacaactgcctaagagttcct 20267804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 21054531 - 21054433
Alignment:
Q  14 gattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaaggcttaagcacaactgattaagacttcct 112  Q
    ||||||||||| ||||||| | ||||  |||||||||||| || |||||| ||||||||||||| ||| | ||||||  |||||||  ||||| |||||    
T  21054531 gattacaaattactcaaggacacttccaagagacttctcaatgttcaagcccaactgcaagagatttctatgcttaaatacaactgcctaagagttcct 21054433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 5825438 - 5825508
Alignment:
Q  148 gacaactccaagagaattccctttgcataagcacagctgcttaagactttcccttgcttaatcacaactgac 219  Q
    ||||||||||| ||| ||||||| || |||||||| |||||||||||||| || ||||  ||||||||||||    
T  5825438 gacaactccaaaagagttccctt-gcttaagcacaactgcttaagactttaccctgctcgatcacaactgac 5825508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 21932145 - 21932180
Alignment:
Q  220 tcagaagcagatagagatccacttctgaagtgatgt 255  Q
    ||||||||||||||||||||||||||||||| ||||    
T  21932145 tcagaagcagatagagatccacttctgaagtaatgt 21932180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 16152977 - 16152763
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaaggcttaagcacaactgat 101  Q
    |||||||||||| |||||||||| ||||||| | ||||| | |  ||||||  |||||||||||||||||||||| |||| | ||||||||||| ||| |    
T  16152977 ataatcactctgaattacaaattgctcaaggacacttctaata--cttctctttgctcaagcacaactgcaagaggcttctatgcttaagcacacctgct 16152880  T
Q  102 taagacttcctactctattacactacctaaatatttcttgctccaagacaactccaagagaattccctttgcataagcacagctgcttaagactttccct 201  Q
    ||| ||||| | |||||  |||||||||||| | |||||   | | || |||||||||||| || ||||||| |||||||| || |||||||||||||||    
T  16152879 taaaacttc-tgctctaggacactacctaaagacttctttgccaaggaaaactccaagagactttcctttgcctaagcacaacttcttaagactttccct 16152781  T
Q  202 tgcttaatcacaactgac 219  Q
    |||| |||||||||||||    
T  16152780 tgctcaatcacaactgac 16152763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 8685098 - 8685259
Alignment:
Q  46 acttctcagtgctcaagcacaactgcaagagacttcaaggcttaagcacaactgattaagacttcctactctattacactacctaaatatttcttgctcc 145  Q
    |||||||  ||||||| ||||| ||||||||||| | |  |||||||||| ||| |||||| ||  | |||||  |||||||||||| | ||| ||||      
T  8685098 acttctctttgctcaaccacaattgcaagagactcctatacttaagcacacctgcttaagattta-tgctctagaacactacctaaagacttcctgctaa 8685196  T
Q  146 aagacaactccaagagaattccctttgcataagcacagctgcttaagactttcccttgcttaa 208  Q
    | ||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  8685197 aggacaactccaatagacttccctttgcttaagcacaactgcttaagactttcccttgcttaa 8685259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 25188676 - 25188711
Alignment:
Q  220 tcagaagcagatagagatccacttctgaagtgatgt 255  Q
    |||||||||||||||| |||||||||||||||||||    
T  25188676 tcagaagcagatagagttccacttctgaagtgatgt 25188711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 21823151 - 21823205
Alignment:
Q  148 gacaactccaagagaattccctttgcataagcacagctgcttaagactttccctt 202  Q
    ||||||||||||||| |||||||||| ||| |||| || ||||||||||| ||||    
T  21823151 gacaactccaagagagttccctttgcttaaacacaactacttaagacttttcctt 21823205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 21824011 - 21824065
Alignment:
Q  148 gacaactccaagagaattccctttgcataagcacagctgcttaagactttccctt 202  Q
    ||||||||||||||| |||||||||  |||| ||| |||||||||||||| ||||    
T  21824011 gacaactccaagagagttccctttggttaaggacaactgcttaagacttttcctt 21824065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 19539955 - 19539995
Alignment:
Q  42 agagacttctcagtgctcaagcacaactgcaagagacttcaa 83  Q
    |||||||||| | |||||||||||||||||||||||||||||    
T  19539955 agagacttctaa-tgctcaagcacaactgcaagagacttcaa 19539995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 26654041 - 26653973
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgc 71  Q
    ||||||||| |||||||||||||  |||||| | ||||  |||||||||||  |||||||||||||||||    
T  26654041 ataatcactttggattacaaattggtcaaggacacttccaagagacttctc-ttgctcaagcacaactgc 26653973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 28551543 - 28551503
Alignment:
Q  42 agagacttctcagtgctcaagcacaactgcaagagacttca 82  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  28551543 agagacttcaaattgctcaagcacaactgcaagagacttca 28551503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 40781954 - 40781993
Alignment:
Q  42 agagacttctcagtgctcaagcacaactgcaagagacttca 82  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  40781954 agagacttc-caatgctcaagcacaactgcaagagacttca 40781993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 17206386 - 17206553
Alignment:
Q  4 aatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaaggcttaagcacaactgatta 103  Q
    ||||||||||||||||| | |  |||||| ||||||  || ||||||||| ||||||||||||||| ||||| ||||| | | ||||||||||||  |||    
T  17206386 aatcactctggattacatactgatcaaggactcttccaagtgacttctcaatgctcaagcacaactacaagaaacttctatgtttaagcacaactactta 17206485  T
Q  104 agacttcctactctattacactacctaaatatttcttgctccaagacaactccaagagaattcccttt 171  Q
    ||||||||| |||||| |||||||||||| | |||||| || | ||||||||||||||| ||||||||    
T  17206486 agacttcctgctctatgacactacctaaagacttcttgttcaaggacaactccaagagacttcccttt 17206553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 34659417 - 34659619
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaaggcttaagcacaactgat 101  Q
    ||||||||| ||||||||  ||| ||||||| | ||||   ||||||||||  || |||||||||||||||||||||||    |||||| |||| ||| |    
T  34659417 ataatcactatggattacgcattgctcaaggacacttccaggagacttctctttgttcaagcacaactgcaagagacttatgtgcttaaacacacctgct 34659516  T
Q  102 taagacttcctactctattacactacctaaatatttcttgctccaag-acaactccaagagaattccctttgcataagcacagctgcttaagactttccc 200  Q
    |||||||||| ||||||  ||||||| |||  |||||||| |||||| |||||||||||||| |||| ||||| |||||||| ||| ||||||||||||     
T  34659517 taagacttcc-actctaggacactacttaaggatttcttg-tccaaggacaactccaagagacttccatttgcttaagcacaactgtttaagactttcct 34659614  T
Q  201 ttgct 205  Q
    |||||    
T  34659615 ttgct 34659619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 19730922 - 19730989
Alignment:
Q  13 ggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagactt 80  Q
    ||||||||||||  | |||| | ||||  |||||||||||  ||||||||||||||||||||||||||    
T  19730922 ggattacaaattgattaaggacacttccaagagacttctctatgctcaagcacaactgcaagagactt 19730989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 32543537 - 32543572
Alignment:
Q  220 tcagaagcagatagagatccacttctgaagtgatgt 255  Q
    |||||||||||||||| |||||||||||||||||||    
T  32543537 tcagaagcagatagagttccacttctgaagtgatgt 32543572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 27167334 - 27167296
Alignment:
Q  42 agagacttctcagtgctcaagcacaactgcaagagactt 80  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  27167334 agagacttctcaatgctcaagaacaactgcaagagactt 27167296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 17208577 - 17208630
Alignment:
Q  167 cctttgcataagcacagctgcttaagactttcccttgcttaatcacaactgact 220  Q
    ||||||| |||||||| ||||||||||||||| |||||| || | |||||||||    
T  17208577 cctttgcttaagcacaactgcttaagactttctcttgctcaaccgcaactgact 17208630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 22747870 - 22748075
Alignment:
Q  13 ggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaaggcttaagcacaactgattaagacttcct 112  Q
    |||||||||||||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||||| |  |||||||||||||| ||||||||||||    
T  22747870 ggattacaaatttctcaaggactcttccaagagacttctcaatgctcaagcacaactgcaagagacttcta-acttaagcacaactgcttaagacttcct 22747968  T
Q  113 actctattacactacctaaatatttcttgctccaagacaactccaagagaattccctttgcataagcacagctgcttaagactttcccttgcttaatcac 212  Q
     ||| |  || ||||||||| | ||||||||| | || |||||  ||||| ||| |||||| | || | | ||  | ||||| |||||||||| ||||||    
T  22747969 cctccaggactctacctaaagacttcttgctcaaggataactctcagagacttctctttgctttaggataactcttaaagac-ttcccttgctcaatcac 22748067  T
Q  213 aactgact 220  Q
    ||||||||    
T  22748068 aactgact 22748075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 19570233 - 19570120
Alignment:
Q  92 cacaactgattaagacttcctactctattacactacctaaatatttcttgctccaagacaactccaagagaattccctttgcataagcacagctgcttaa 191  Q
    |||||||| | |||||||| | || ||  |||| ||||||| | ||||| ||| | ||||||||||||| | ||||||||||||||||||| ||||||||    
T  19570233 cacaactgctcaagacttcttgctttaggacaccacctaaagacttcttactcgaggacaactccaagaaacttccctttgcataagcacaactgcttaa 19570134  T
Q  192 gactttcccttgct 205  Q
    ||||||||||||||    
T  19570133 gactttcccttgct 19570120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 643297 - 643259
Alignment:
Q  42 agagacttctcagtgctcaagcacaactgcaagagacttc 81  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  643297 agagacttctca-tgctcaagcacaactgcaagagacttc 643259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 16525389 - 16525323
Alignment:
Q  148 gacaactccaagagaattccctttgcataagcacagctgcttaagactttcccttgcttaatcacaa 214  Q
    ||||||| ||| ||| |||||| ||| |||| ||| ||||||||||||||||||| || ||||||||    
T  16525389 gacaacttcaaaagacttccctctgcttaagtacaactgcttaagactttccctttctcaatcacaa 16525323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 23413571 - 23413531
Alignment:
Q  42 agagacttctcagtgctcaagcacaactgcaagagacttcaa 83  Q
    |||||||||| | |||||||||||||||||||||||||||||    
T  23413571 agagacttctaa-tgctcaagcacaactgcaagagacttcaa 23413531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 24163160 - 24163197
Alignment:
Q  44 agacttctcagtgctcaagcacaactgcaagagacttc 81  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  24163160 agacttctcaatgctcaagtacaactgcaagagacttc 24163197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 167
Target Start/End: Complemental strand, 12439923 - 12439759
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaaggcttaagcacaactgat 101  Q
    ||||||||| ||||||||||| | ||||||  | |||   |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||  |    
T  12439923 ataatcactatggattacaaaatgctcaagcacactttcaagagacttctcaatgctcaagcacaactgcaagagacttcaatgcttaagcacacctact 12439824  T
Q  102 taagacttcctactctattacactacctaaatatttcttgctccaagacaactccaagagaattcc 167  Q
    ||||||||||| |||||  |||||||||||||||||  ||||| |  |||||||||||||| ||||    
T  12439823 taagacttccttctctaagacactacctaaatattt-atgctcaagaacaactccaagagacttcc 12439759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 9757110 - 9757040
Alignment:
Q  149 acaactccaagagaattccctttgcataagcacagctgcttaagactttcccttgcttaatcacaactgact 220  Q
    |||||| ||||||| ||||||| || |||||||| || ||||||||||| || ||||||||||||| |||||    
T  9757110 acaactgcaagagacttccctt-gcttaagcacaactacttaagactttaccctgcttaatcacaagtgact 9757040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 29215074 - 29215107
Alignment:
Q  220 tcagaagcagatagagatccacttctgaagtgat 253  Q
    |||||||||||||||| |||||||||||||||||    
T  29215074 tcagaagcagatagagttccacttctgaagtgat 29215107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 22317363 - 22317161
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaaggcttaagcacaactgat 101  Q
    ||||||||||||||||||||||| ||||||| | ||||   || |||||||  |||||||| |||  || |||||||||| | ||||||||||||||  |    
T  22317363 ataatcactctggattacaaattgctcaaggacacttccaggacacttctctttgctcaagtacagttgtaagagacttctatgcttaagcacaacttct 22317264  T
Q  102 taagacttcctactctattacactacctaaatatttcttgctccaagacaactccaagagaattccctttgcataagcacagctgcttaagactttccct 201  Q
    ||||| ||||| |||||  |||||| | |||   ||| ||||| | ||||||||||||||| |||||||||| ||||| || || |||||||||||| ||    
T  22317263 taagaattcctgctctaggacactatccaaagtcttc-tgctcaaggacaactccaagagacttccctttgcgtaagcgcaactacttaagactttctct 22317165  T
Q  202 tgct 205  Q
    ||||    
T  22317164 tgct 22317161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 39981151 - 39981056
Alignment:
Q  125 tacctaaatatttcttgctccaagacaactccaagagaattccctttgcataagcacagctgcttaagactttcccttgcttaatcacaactgact 220  Q
    |||||||| | ||| ||| | ||||||||||||||| | ||||| |||| |||||| | |||||||||||||||||||||| ||||| ||||||||    
T  39981151 tacctaaagacttcctgcccaaagacaactccaagaaacttcccattgcttaagcataactgcttaagactttcccttgctcaatcagaactgact 39981056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 11830146 - 11830012
Alignment:
Q  86 cttaagcacaactgattaagacttcctactctat---taca-ctacctaaatatttcttgctccaagacaactccaagagaattccctttgcataagcac 181  Q
    |||||||||||||| |||||||||||| |||||    || | ||||||||| | ||||||| | |  |||||||||||||| |||||||||| |||||||    
T  11830146 cttaagcacaactgtttaagacttcctgctctaggaatatatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgcttaagcac 11830047  T
Q  182 agctgcttaagactttcccttgcttaatcacaact 216  Q
    | ||||||||||||||||||| || ||||||||||    
T  11830046 aactgcttaagactttcccttactcaatcacaact 11830012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 10878483 - 10878290
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaaggcttaagcacaactgat 101  Q
    |||||||||||||||||||||||  |||||| ||||||  | |||||||||| |||||||| |||||| ||||| ||||    | ||||||||||||| |    
T  10878483 ataatcactctggattacaaattgttcaaggactcttccaaaagacttctcaatgctcaagaacaactacaagatactt-tttgattaagcacaactgct 10878385  T
Q  102 taagacttcctactctattacactacctaaatatttcttgctccaagacaactccaagagaattccctttgcataagcacagctgcttaagactt 196  Q
    ||||||||||| || ||   ||||||||||| | ||  ||||| | ||||||||||||| | |||| ||| | |||||| | |||||||| ||||    
T  10878384 taagacttcctgctataaggcactacctaaagactttctgctcaaggacaactccaagatacttccattttcttaagcataactgcttaaaactt 10878290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 13178459 - 13178367
Alignment:
Q  124 ctacctaaatatttcttgctccaagacaactccaagagaattccctttgcataagcacagctgcttaagactttcccttgcttaatcacaact 216  Q
    ||||||||| | ||| ||||| | || |||||||||||| || | ||||| ||||| || |||||||||||||||||||||| ||| ||||||    
T  13178459 ctacctaaaaacttcctgctcaaggataactccaagagacttacatttgcttaagcgcaactgcttaagactttcccttgctcaatgacaact 13178367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 9323157 - 9323213
Alignment:
Q  148 gacaactccaagagaattccctttgcataagcacagctgcttaagactttcccttgct 205  Q
    ||||||||||||||| |||||||||| |||| |||  |||||||||||||||||||||    
T  9323157 gacaactccaagagacttccctttgcttaagtaca-ttgcttaagactttcccttgct 9323213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 8711891 - 8711824
Alignment:
Q  14 gattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttc 81  Q
    ||||||||||| ||||||| | ||||| ||||||||| |  |||||||||||||||  ||||||||||    
T  8711891 gattacaaattgctcaaggacacttctaagagacttccctatgctcaagcacaactttaagagacttc 8711824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 9063778 - 9063711
Alignment:
Q  14 gattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttc 81  Q
    ||||||||||| ||||||| | ||||| ||||||||| |  |||||||||||||||  ||||||||||    
T  9063778 gattacaaattgctcaaggacacttctaagagacttccctatgctcaagcacaactttaagagacttc 9063711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 46797062 - 46797017
Alignment:
Q  55 tgctcaagcacaactgcaagagacttc-aaggcttaagcacaactg 99  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||    
T  46797062 tgctcaagcacaactgcaagagacttcaaatgctcaagcacaactg 46797017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 20747297 - 20747257
Alignment:
Q  26 ctcaagggctcttctcagagacttctcagtgctcaagcaca 66  Q
    ||||||| ||||||| |||||||||||| ||||||||||||    
T  20747297 ctcaaggactcttctaagagacttctcaatgctcaagcaca 20747257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 46350524 - 46350484
Alignment:
Q  42 agagacttctcagtgctcaagcacaactgcaagagacttca 82  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  46350524 agagacttcaaattgctcaagcacaactgcaagagacttca 46350484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 19143482 - 19143409
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaaga 75  Q
    ||||||||||| ||||||||||||||||||| ||||||  ||||| |||||| |||||||||||||||||||||    
T  19143482 ataatcactctagattacaaatttctcaaggactcttccaagagaattctcaatgctcaagcacaactgcaaga 19143409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 20742881 - 20742808
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaaga 75  Q
    ||||||||||| ||||||||||||||||||| ||||||  ||||| |||||| |||||||||||||||||||||    
T  20742881 ataatcactctagattacaaatttctcaaggactcttccaagagaattctcaatgctcaagcacaactgcaaga 20742808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 22579851 - 22579807
Alignment:
Q  55 tgctcaagcacaactgcaagagacttcaaggcttaagcacaactg 99  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||    
T  22579851 tgctcaagcacaactgcaagagacttctatgctcaagcacaactg 22579807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 1129 - 1196
Alignment:
Q  14 gattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttc 81  Q
    ||||||||||||||||||| | ||||  ||||||||| || |||||||||||||||||||||||||||    
T  1129 gattacaaatttctcaaggacacttccaagagacttcgcaatgctcaagcacaactgcaagagacttc 1196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 1212 - 1311
Alignment:
Q  125 tacctaaatatttcttgctccaagacaactccaagagaattccctttgcataagcacagctgcttaagactttcccttgcttaatcacaactgactcaga 224  Q
    |||||||| | ||| ||||| | || |||||||||||| ||| |||||  ||||| || |||||||||||||||||||||| |||||||||| |||||||    
T  1212 tacctaaagacttcatgctcaaggaaaactccaagagacttctctttgtttaagcccaactgcttaagactttcccttgctcaatcacaactaactcaga 1311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 18140 - 18067
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaaga 75  Q
    ||||||||||||||||| ||||| ||||||| ||||||  ||| |||||||  |||||||||||||||||||||    
T  18140 ataatcactctggattaaaaattgctcaaggactcttccaagatacttctctatgctcaagcacaactgcaaga 18067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 30670 - 30603
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaact 69  Q
    ||||| ||| ||||||||||||| ||||||| |||||||   |||||||||| |||||||||||||||    
T  30670 ataattactttggattacaaattgctcaaggactcttctagtagacttctcaatgctcaagcacaact 30603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 2306 - 2227
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttc 81  Q
    ||||||||||||||||||||||| ||||||| ||||||  |||||||| | | |  |||||||||||||||| |||||||    
T  2306 ataatcactctggattacaaattgctcaaggactcttccaagagacttattaattgtcaagcacaactgcaaaagacttc 2227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 25175 - 25254
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaagagacttc 81  Q
    ||||||||| ||||||||||||| ||||||| ||||||  | |||||||| | ||||||||||||| ||||||| |||||    
T  25175 ataatcactttggattacaaattgctcaaggactcttccaatagacttcttaatgctcaagcacaattgcaagacacttc 25254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 382238 - 382309
Alignment:
Q  2 ataatcactctggattacaaatttctcaagggctcttctcagagacttctcagtgctcaagcacaactgcaa 73  Q
    ||||||||||  ||||||||||| ||||||| ||||||  |||||||||| | |||||||||||||||||||    
T  382238 ataatcactcatgattacaaattgctcaaggactcttccaagagacttcttaatgctcaagcacaactgcaa 382309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 128529 - 128621
Alignment:
Q  124 ctacctaaatatttcttgctccaagacaactccaagagaattccctttgcataagcacagctgcttaagactttcccttgcttaatcacaact 216  Q
    ||||||||| | ||| ||||| | || |||||||||||| || | ||||| ||||| || |||||||||||||||||||||| ||| ||||||    
T  128529 ctacctaaaaacttcctgctcaaggataactccaagagacttacatttgcttaagcgcaactgcttaagactttcccttgctcaatgacaact 128621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 2045 - 2080
Alignment:
Q  220 tcagaagcagatagagatccacttctgaagtgatgt 255  Q
    |||||||||||||||| |||||||||||||||||||    
T  2045 tcagaagcagatagagttccacttctgaagtgatgt 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 11563 - 11602
Alignment:
Q  42 agagacttctcagtgctcaagcacaactgcaagagacttc 81  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  11563 agagacttctcaatgctcaagcacaactgcaaaagacttc 11602  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 158424 - 158457
Alignment:
Q  222 agaagcagatagagatccacttctgaagtgatgt 255  Q
    |||||||||||||| |||||||||||||||||||    
T  158424 agaagcagatagagttccacttctgaagtgatgt 158457  T

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Target: scaffold0251 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 7106 - 7142
Alignment:
Q  220 tcagaagcagatagagatccacttctgaagtgatgtc 256  Q
    |||||||||||||| | ||||||||||||||||||||    
T  7106 tcagaagcagatagtgttccacttctgaagtgatgtc 7142  T

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Target: scaffold0176 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 8699 - 8738
Alignment:
Q  42 agagacttctcagtgctcaagcacaactgcaagagacttca 82  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  8699 agagacttct-attgctcaagcacaactgcaagagacttca 8738  T

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