View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7436_high_4 (Length: 411)

Name: NF7436_high_4
Description: NF7436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7436_high_4
NF7436_high_4
[»] chr1 (8 HSPs)
chr1 (1-375)||(37948997-37949371)
chr1 (4-81)||(13946934-13947011)
chr1 (4-84)||(27172011-27172091)
chr1 (1-42)||(34970194-34970235)
chr1 (9-55)||(27171837-27171883)
chr1 (54-84)||(49776819-49776849)
chr1 (9-42)||(38338884-38338917)
chr1 (50-82)||(33400857-33400889)
[»] chr3 (10 HSPs)
chr3 (4-85)||(43797651-43797732)
chr3 (4-84)||(46883424-46883504)
chr3 (20-84)||(29828685-29828749)
chr3 (4-84)||(8657415-8657488)
chr3 (4-84)||(46883624-46883697)
chr3 (4-83)||(4041395-4041483)
chr3 (50-84)||(38499819-38499853)
chr3 (50-84)||(38500088-38500122)
chr3 (9-55)||(43797859-43797904)
chr3 (50-86)||(8799315-8799351)
[»] chr6 (2 HSPs)
chr6 (4-85)||(33277314-33277395)
chr6 (4-66)||(24565314-24565376)
[»] chr4 (8 HSPs)
chr4 (9-84)||(26297323-26297397)
chr4 (12-84)||(17914722-17914794)
chr4 (27-85)||(21785718-21785776)
chr4 (4-56)||(3556577-3556629)
chr4 (4-48)||(5465898-5465942)
chr4 (4-48)||(5466061-5466105)
chr4 (11-55)||(9551444-9551488)
chr4 (4-48)||(11790074-11790118)
[»] chr2 (11 HSPs)
chr2 (20-84)||(33491329-33491393)
chr2 (4-84)||(4371454-4371543)
chr2 (8-77)||(8237860-8237929)
chr2 (4-55)||(17200116-17200167)
chr2 (50-86)||(22563208-22563244)
chr2 (9-84)||(13979849-13979924)
chr2 (9-55)||(17200295-17200341)
chr2 (4-85)||(21265774-21265864)
chr2 (4-54)||(34645758-34645808)
chr2 (4-48)||(12232608-12232651)
chr2 (53-85)||(29893067-29893099)
[»] chr8 (6 HSPs)
chr8 (9-55)||(6911067-6911113)
chr8 (9-54)||(8489412-8489457)
chr8 (9-85)||(15009075-15009160)
chr8 (25-93)||(31547571-31547639)
chr8 (50-86)||(40621642-40621678)
chr8 (50-86)||(43801738-43801774)
[»] chr7 (6 HSPs)
chr7 (20-83)||(2830833-2830896)
chr7 (50-85)||(19318486-19318521)
chr7 (4-55)||(35207216-35207267)
chr7 (50-84)||(25048291-25048325)
chr7 (4-48)||(6408466-6408510)
chr7 (54-86)||(19318419-19318451)
[»] chr5 (3 HSPs)
chr5 (4-55)||(17370105-17370156)
chr5 (50-85)||(31193964-31193999)
chr5 (50-84)||(31194232-31194266)


Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 37948997 - 37949371
Alignment:
Q  1 cttaaccattagatatttgtttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactcaatcatatctatataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37948997 cttaaccattagatatttgtttgccacatgtcttacatccaagccctaaatggagcttagcttaaatggagcatacctgaactcaatcatatctatataa 37949096  T
Q  101 acccataacaatataaactgcaggcgtgtagagaaattttgttaacccgctggtttcaaattcggatgcatttatatgaaaacatttataactctggttt 200  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  37949097 acccataacaatataaaccggaggcgtgtagagaaattgtgttaacccgctgatttcaaatttggatgcatttatatgaaaacatttataactctggttt 37949196  T
Q  201 taaaggagaagagtctttggtaatttggagtttagcattgatagaagtattgtccgattaataattgttccaccaaattccaccaaaaatagaattcggg 300  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37949197 taaatgagaagagtctttggtaatttggagtttagcattgatagaagtattgtctgattaataattgttccaccaaattccaccaaaaatagaattcggg 37949296  T
Q  301 gttccgaacttctttcgttattattctaaatttctaattattctaatttgttgaacacttcattattgatccaaa 375  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37949297 tttccgaacttctttcattattattctaaatttctaattattctaatttgttgaacacttcattattgatccaaa 37949371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 13947011 - 13946934
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaa 81  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||    
T  13947011 aaccgttagatatttttttgccacatgtcttacatccaaaccctaaatggagcttagcctaaatggagcatacccgaa 13946934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 27172011 - 27172091
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactc 84  Q
    |||| |||||||||| ||||||||||||||||||||||| || || |||||||||||| |||||||||||||| |||||||    
T  27172011 aaccgttagatatttttttgccacatgtcttacatccaaaccttaaatggagcttagcctaaatggagcatactcgaactc 27172091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34970194 - 34970235
Alignment:
Q  1 cttaaccattagatatttgtttgccacatgtcttacatccaa 42  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  34970194 cttaaccgttagatatttttttgccacatgtcttacatccaa 34970235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 27171883 - 27171837
Alignment:
Q  9 ttagatatttgtttgccacatgtcttacatccaagccctagatggag 55  Q
    |||||||||| ||||||||||||||||||||||| || || ||||||    
T  27171883 ttagatatttttttgccacatgtcttacatccaaaccataaatggag 27171837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 84
Target Start/End: Complemental strand, 49776849 - 49776819
Alignment:
Q  54 agcttagcttaaatggagcatacccgaactc 84  Q
    |||||||||||||||||||||||||||||||    
T  49776849 agcttagcttaaatggagcatacccgaactc 49776819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 38338884 - 38338917
Alignment:
Q  9 ttagatatttgtttgccacatgtcttacatccaa 42  Q
    |||||||||| |||||||||||||||||||||||    
T  38338884 ttagatatttttttgccacatgtcttacatccaa 38338917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 33400889 - 33400857
Alignment:
Q  50 atggagcttagcttaaatggagcatacccgaac 82  Q
    ||||||||||||||||||||||||| |||||||    
T  33400889 atggagcttagcttaaatggagcatgcccgaac 33400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 43797732 - 43797651
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactca 85  Q
    ||||||||||||||| ||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||    
T  43797732 aaccattagatatttttttgccacatgtcttacatccaaaccttaaatggagtttagcttaaatggagcatacccgaactca 43797651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 46883504 - 46883424
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactc 84  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||    
T  46883504 aaccgttagatatttttttgccacatgtcttacatccaaaccctaaatggagtttagcctaaatggagcatacccgaactc 46883424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 29828749 - 29828685
Alignment:
Q  20 tttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactc 84  Q
    |||| |||| ||||||||||||| | ||| |||||||||||| |||||| |||||||||||||||    
T  29828749 tttgtcacaagtcttacatccaaacgctaaatggagcttagcctaaatgaagcatacccgaactc 29828685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 8657488 - 8657415
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactc 84  Q
    |||| |||||||||||||||||||||||||| ||| ||| ||||| ||||||       ||||||||||||||||||||||    
T  8657488 aaccgttagatatttgtttgccacatgtcttgcattcaaaccctaaatggag-------taaatggagcatacccgaactc 8657415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 46883624 - 46883697
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactc 84  Q
    |||| |||||||||| ||||||||||||||| ||||||| ||||| ||||||       ||||||||||||||||||||||    
T  46883624 aaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggag-------taaatggagcatacccgaactc 46883697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 4041395 - 4041483
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatgg---------agcttagcttaaatggagcatacccgaact 83  Q
    |||| |||||||||| ||||||||||||||| ||||||| ||||| ||||         |||||||| |||||||||||||||||||||    
T  4041395 aaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaact 4041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 38499853 - 38499819
Alignment:
Q  50 atggagcttagcttaaatggagcatacccgaactc 84  Q
    |||||||||||| ||||||||||||||||||||||    
T  38499853 atggagcttagcctaaatggagcatacccgaactc 38499819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 38500088 - 38500122
Alignment:
Q  50 atggagcttagcttaaatggagcatacccgaactc 84  Q
    |||||||||||| ||||||||||||||||||||||    
T  38500088 atggagcttagcctaaatggagcatacccgaactc 38500122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 43797859 - 43797904
Alignment:
Q  9 ttagatatttgtttgccacatgtcttacatccaagccctagatggag 55  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  43797859 ttagatattt-tttgccacatgtcttgcatccaagccctaaatggag 43797904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 8799351 - 8799315
Alignment:
Q  50 atggagcttagcttaaatggagcatacccgaactcaa 86  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  8799351 atggagcctagcctaaatggagcatacccgaactcaa 8799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 33277395 - 33277314
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactca 85  Q
    |||||||| |||||| ||||||||||||||| ||||||| ||||| ||| || ||||| |||||||||||||||||||||||    
T  33277395 aaccattaaatatttttttgccacatgtcttgcatccaaaccctaaatgaagtttagcctaaatggagcatacccgaactca 33277314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 24565314 - 24565376
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatggagcttagcttaaa 66  Q
    |||| |||||| ||| |||||||||||||||||||| || ||||| |||||||||||| ||||    
T  24565314 aaccgttagatgtttttttgccacatgtcttacatctaaaccctaaatggagcttagcctaaa 24565376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 26297397 - 26297323
Alignment:
Q  9 ttagatatttgtttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactc 84  Q
    |||||||||| ||||||||||||||| ||||||| ||||| |||||||||||| |||||||||||||||| |||||    
T  26297397 ttagatattt-tttgccacatgtcttgcatccaaaccctaaatggagcttagcctaaatggagcatacccaaactc 26297323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 17914794 - 17914722
Alignment:
Q  12 gatatttgtttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactc 84  Q
    ||||||| ||||||||||||||| ||||||| ||||| ||||| |||||| |||||||| |||||||||||||    
T  17914794 gatatttttttgccacatgtcttgcatccaaaccctaaatggaacttagcctaaatggaacatacccgaactc 17914722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 21785776 - 21785718
Alignment:
Q  27 catgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactca 85  Q
    |||||||| ||||||| ||||| ||| |||||||| ||||| |||||||||||||||||    
T  21785776 catgtcttgcatccaaaccctaaatgaagcttagcctaaatagagcatacccgaactca 21785718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 3556577 - 3556629
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatggagc 56  Q
    |||| |||||||||| ||||||||||||||| ||||||| ||||| |||||||    
T  3556577 aaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagc 3556629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 5465942 - 5465898
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagcccta 48  Q
    |||| |||||||||| |||||||||||||||||||| || |||||    
T  5465942 aaccgttagatatttttttgccacatgtcttacatctaaacccta 5465898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 5466061 - 5466105
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagcccta 48  Q
    |||| |||||||||| | ||||||||||||||||||||| |||||    
T  5466061 aaccgttagatatttttgtgccacatgtcttacatccaaacccta 5466105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 9551444 - 9551488
Alignment:
Q  11 agatatttgtttgccacatgtcttacatccaagccctagatggag 55  Q
    |||||||| ||||||| ||||||| ||||||||||||| ||||||    
T  9551444 agatatttttttgccaaatgtcttccatccaagccctaaatggag 9551488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 11790074 - 11790118
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagcccta 48  Q
    |||| |||||||||| ||||||||||||||| ||||||| |||||    
T  11790074 aaccgttagatatttttttgccacatgtcttgcatccaaacccta 11790118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 33491393 - 33491329
Alignment:
Q  20 tttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactc 84  Q
    ||||||||||||||| ||||||| ||||| |||||||||||| |||||||| |||||||||||||    
T  33491393 tttgccacatgtcttgcatccaaaccctaaatggagcttagcctaaatggaacatacccgaactc 33491329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 4371543 - 4371454
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccc---------tagatggagcttagcttaaatggagcatacccgaactc 84  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||         || |||||||||||| ||||||||||||||||||||||    
T  4371543 aaccattagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 4371454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 8237929 - 8237860
Alignment:
Q  8 attagatatttgtttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacc 77  Q
    |||||||| || ||||||||||||||| ||||| |  |||| |||||||||||| |||||||||||||||    
T  8237929 attagatacttttttgccacatgtcttgcatcctaatcctaaatggagcttagcctaaatggagcatacc 8237860  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 17200167 - 17200116
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatggag 55  Q
    ||||||||||||||| |||||||||||||||||||||||  |||| ||||||    
T  17200167 aaccattagatatttatttgccacatgtcttacatccaaatcctaaatggag 17200116  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 22563244 - 22563208
Alignment:
Q  50 atggagcttagcttaaatggagcatacccgaactcaa 86  Q
    |||||||||||| ||||||||||||||||||||||||    
T  22563244 atggagcttagcctaaatggagcatacccgaactcaa 22563208  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 13979849 - 13979924
Alignment:
Q  9 ttagatatttgtttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactc 84  Q
    |||||||||| ||||||| |||||| |||| ||| || || || |||| |||| ||||||||||||| ||||||||    
T  13979849 ttagatatttttttgccatatgtctgacattcaaaccttaaatagagcgtagcctaaatggagcatatccgaactc 13979924  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 17200295 - 17200341
Alignment:
Q  9 ttagatatttgtttgccacatgtcttacatccaagccctagatggag 55  Q
    |||||||||| ||||||||||||||||||||||| || || ||||||    
T  17200295 ttagatatttttttgccacatgtcttacatccaaaccttaaatggag 17200341  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 21265774 - 21265864
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccc---------tagatggagcttagcttaaatggagcatacccgaactca 85  Q
    |||||||||||| || ||||||||||||||| ||||||| |||         || |||||||||||||||||| |||||||| ||||||||    
T  21265774 aaccattagatacttttttgccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaatagagcatactcgaactca 21265864  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 34645758 - 34645808
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatgga 54  Q
    |||| ||||||||||  |||||||||||||||||||||| ||||| |||||    
T  34645758 aaccgttagatattttcttgccacatgtcttacatccaaaccctaaatgga 34645808  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 12232651 - 12232608
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagcccta 48  Q
    |||| |||||||||| ||||||||||||||||||||||| |||||    
T  12232651 aaccgttagatattt-tttgccacatgtcttacatccaaacccta 12232608  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 29893067 - 29893099
Alignment:
Q  53 gagcttagcttaaatggagcatacccgaactca 85  Q
    ||||||||| |||||||||||||||||||||||    
T  29893067 gagcttagcctaaatggagcatacccgaactca 29893099  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 6911113 - 6911067
Alignment:
Q  9 ttagatatttgtttgccacatgtcttacatccaagccctagatggag 55  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  6911113 ttagatatttttttgccacatgtcttacatccaaaccctaaatggag 6911067  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 8489457 - 8489412
Alignment:
Q  9 ttagatatttgtttgccacatgtcttacatccaagccctagatgga 54  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||    
T  8489457 ttagatatttttttgccacatgtcttacatccaaaccctaaatgga 8489412  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 15009075 - 15009160
Alignment:
Q  9 ttagatatttgtttgccacatgtcttacatccaagccctagatgg---------agcttagcttaaatggagcatacccgaactca 85  Q
    ||||||| || ||||||||||||||||||||||| ||||| ||||         |||||||| |||||||||||||||||||||||    
T  15009075 ttagatacttttttgccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaactca 15009160  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 31547639 - 31547571
Alignment:
Q  25 cacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaactcaatcatatc 93  Q
    ||||||||||  |||||| | ||| |||||||||||  ||||||||||||| |||||||| || |||||    
T  31547639 cacatgtcttgaatccaaactctaaatggagcttagtctaaatggagcatatccgaactctataatatc 31547571  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 40621678 - 40621642
Alignment:
Q  50 atggagcttagcttaaatggagcatacccgaactcaa 86  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  40621678 atggagtttagcctaaatggagcatacccgaactcaa 40621642  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 43801738 - 43801774
Alignment:
Q  50 atggagcttagcttaaatggagcatacccgaactcaa 86  Q
    |||||||||||| |||||||| |||||||||||||||    
T  43801738 atggagcttagcctaaatggaacatacccgaactcaa 43801774  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 2830896 - 2830833
Alignment:
Q  20 tttgccacatgtcttacatccaagccctagatggagcttagcttaaatggagcatacccgaact 83  Q
    |||||||||| | | |||||||| ||||| |||||||||| | |||||| ||||||||||||||    
T  2830896 tttgccacatatttcacatccaaaccctaaatggagcttaacctaaatgaagcatacccgaact 2830833  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 19318486 - 19318521
Alignment:
Q  50 atggagcttagcttaaatggagcatacccgaactca 85  Q
    |||||||||||| |||||||||||||||||||||||    
T  19318486 atggagcttagcctaaatggagcatacccgaactca 19318521  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 35207267 - 35207216
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatggag 55  Q
    |||| |||||||||| ||||||||||||||| ||||||| ||||| ||||||    
T  35207267 aaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggag 35207216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 25048291 - 25048325
Alignment:
Q  50 atggagcttagcttaaatggagcatacccgaactc 84  Q
    |||||||||||| ||||||||||||||||||||||    
T  25048291 atggagcttagcctaaatggagcatacccgaactc 25048325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 6408466 - 6408510
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagcccta 48  Q
    |||| |||||||||| ||||||||||||||| ||||||| |||||    
T  6408466 aaccgttagatatttttttgccacatgtcttgcatccaaacccta 6408510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 19318419 - 19318451
Alignment:
Q  54 agcttagcttaaatggagcatacccgaactcaa 86  Q
    |||||||| ||||||||||||||||||||||||    
T  19318419 agcttagcctaaatggagcatacccgaactcaa 19318451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 17370156 - 17370105
Alignment:
Q  4 aaccattagatatttgtttgccacatgtcttacatccaagccctagatggag 55  Q
    |||| |||||||||| ||||||||||||||| ||||||| ||||| ||||||    
T  17370156 aaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggag 17370105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 31193999 - 31193964
Alignment:
Q  50 atggagcttagcttaaatggagcatacccgaactca 85  Q
    |||||||||||| |||||||||||||||||||||||    
T  31193999 atggagcttagcctaaatggagcatacccgaactca 31193964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 31194232 - 31194266
Alignment:
Q  50 atggagcttagcttaaatggagcatacccgaactc 84  Q
    |||||||||||| ||||||||||||||||||||||    
T  31194232 atggagcttagcctaaatggagcatacccgaactc 31194266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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