View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7436_low_1 (Length: 542)

Name: NF7436_low_1
Description: NF7436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7436_low_1
NF7436_low_1
[»] chr4 (2 HSPs)
chr4 (1-527)||(12881858-12882385)
chr4 (260-319)||(8926432-8926492)
[»] chr5 (5 HSPs)
chr5 (37-204)||(3882763-3882927)
chr5 (278-415)||(19585252-19585390)
chr5 (260-308)||(12563967-12564015)
chr5 (260-319)||(20101020-20101080)
chr5 (448-511)||(26503430-26503494)
[»] chr7 (5 HSPs)
chr7 (106-206)||(19840056-19840156)
chr7 (261-319)||(2352149-2352207)
chr7 (397-516)||(16984921-16985044)
chr7 (280-313)||(8923216-8923249)
chr7 (277-310)||(21236392-21236425)
[»] chr1 (4 HSPs)
chr1 (138-214)||(13257414-13257490)
chr1 (129-226)||(25369151-25369248)
chr1 (277-319)||(23420507-23420549)
chr1 (265-302)||(10684195-10684232)
[»] chr8 (3 HSPs)
chr8 (262-319)||(13528960-13529017)
chr8 (262-319)||(13618499-13618556)
chr8 (37-226)||(12847147-12847337)
[»] chr6 (1 HSPs)
chr6 (64-188)||(9368287-9368412)
[»] chr2 (5 HSPs)
chr2 (278-319)||(31275285-31275326)
chr2 (279-319)||(25461239-25461279)
chr2 (277-319)||(19004574-19004616)
chr2 (260-318)||(19541782-19541840)
chr2 (138-190)||(14294377-14294429)
[»] chr3 (1 HSPs)
chr3 (280-313)||(6073018-6073051)


Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 12881858 - 12882385
Alignment:
Q  1 aaatatcacataggcccgcaacttcaaggatccatcatgaccatcaccagcgacatatgtcacctttacaataaaatcatgcatgaacaacaaacttttt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||     
T  12881858 aaatatcacataggcccgcaacttcaaggatccataatgaccatcaccagcgacacatgtcacctttacaataaaagcatgcatgaacgacaaacttttg 12881957  T
Q  101 tcttt-tgtgggatattgacttaaatcaaaggtgggtaaggagacatattacttttgcaagcacttttcctacttgagcatattgacttggaccgtgaaa 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12881958 tctttgtgtgggatattgacttaaatcaaaggtgggtaaggagacatattacttttgcaagcacttttcctacttgagcatgttgacttggaccgtgaaa 12882057  T
Q  200 tttgtgtgtctagattgcaagagtcaatgtgtacccatagataaggtgatgacaagttctgcaagtgcattaaaccataacaagtaataaagtattaagt 299  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12882058 tttgtgtatctagattgcaagagtcaatgtgtacccatagataaggtgatgacaagttctgcaagtgcattaaaccataacaagtaataaagtattaagt 12882157  T
Q  300 tatcgtctccatatggattgcagtcaactaagaaattcactaaactaatttatactagaaagcaatgcaaggggtttaagggttttaccctttttaattg 399  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  12882158 tatcgtctccatatggattgtagtcagctaagaaattcactaaactaatttatactagaaagcaatgcaagggatttaagggttttgccctttttaattg 12882257  T
Q  400 tgtgctcaatgcgagtaaaagtttacagaaaataagagtttgcttcaaaggttagacagcgattaggatttttgaatctcatatgccttctttgtcaaag 499  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12882258 tgtgctcattgcgagtaaaagtttacagaaaataagagtttgcttcaaaggttagacagcgattaggatttttgaatctcttatgccttctttgtcaaag 12882357  T
Q  500 taatacaatattcaatatgaactatgat 527  Q
    ||||||||||||||||||||||||||||    
T  12882358 taatacaatattcaatatgaactatgat 12882385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 8926492 - 8926432
Alignment:
Q  260 gcaagtgcattaaaccataa-caagtaataaagtattaagttatcgtctccatatggattg 319  Q
    |||||||||| ||| ||||  ||||||||||||||  ||||||||||||||||| ||||||    
T  8926492 gcaagtgcatcaaatcatactcaagtaataaagtagcaagttatcgtctccatagggattg 8926432  T

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Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 3882763 - 3882927
Alignment:
Q  37 atgaccatcaccagcgacatatgtcacctttacaataaaatcatgcatgaacaacaaacttttttcttttgtgggatattgacttaaatcaaaggtgggt 136  Q
    ||||||||||||| | |||||||||||||||| |||||| ||||||||||||||  |  |||| | ||||||  ||  | ||||||||||||||||||||    
T  3882763 atgaccatcaccaacaacatatgtcacctttaaaataaattcatgcatgaacaatgagattttgt-ttttgt--gacgtcgacttaaatcaaaggtgggt 3882859  T
Q  137 aaggagacatattacttttgcaagcacttttcctacttgagcatattgacttggaccgtgaaatttgt 204  Q
     | ||||||| ||| |||| |  |||||  |||||||||||||| |||||||||| |  |||||||||    
T  3882860 gaagagacatgttatttttacgcgcactcctcctacttgagcatgttgacttggatcaagaaatttgt 3882927  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 415
Target Start/End: Complemental strand, 19585390 - 19585252
Alignment:
Q  278 aacaagtaataaagtattaagttatcgtctccatatggattgcagtcaactaagaaattcactaaac-taatttatacta-gaaagcaatgcaaggggtt 375  Q
    ||||| |||||||||| ||| |||||||||| ||| ||||||  |||||||||| ||| | ||| || |||| || |||| ||||||| |  ||||||||    
T  19585390 aacaaataataaagtagtaaattatcgtctctatagggattgttgtcaactaagcaatactctatacctaatataaactaagaaagcatttaaaggggtt 19585291  T
Q  376 taagggttttaccctttttaattgtgtgctcaatgcgagt 415  Q
    |||||||||||  |||||  ||||||||||  ||||||||    
T  19585290 taagggtttta-acttttggattgtgtgctggatgcgagt 19585252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 12563967 - 12564015
Alignment:
Q  260 gcaagtgcattaaaccataacaagtaataaagtattaagttatcgtctc 308  Q
    |||||||||  ||| |||||||| |||||||||| ||||||||||||||    
T  12563967 gcaagtgcaccaaatcataacaaataataaagtaataagttatcgtctc 12564015  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 20101080 - 20101020
Alignment:
Q  260 gcaagtgcattaaaccataa-caagtaataaagtattaagttatcgtctccatatggattg 319  Q
    |||||||||| ||| ||||  |||||||||||||| |||||||| ||||||||| ||||||    
T  20101080 gcaagtgcatcaaatcatactcaagtaataaagtagtaagttatagtctccataaggattg 20101020  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 511
Target Start/End: Original strand, 26503430 - 26503494
Alignment:
Q  448 aggttagacagcgattaggatt-tttgaatctcatatgccttctttgtcaaagtaatacaatatt 511  Q
    |||||||||||||||||||||| ||  |||||| | || ||||||||||||| |||| |||||||    
T  26503430 aggttagacagcgattaggattcttctaatctcctttgtcttctttgtcaaactaatgcaatatt 26503494  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 19840156 - 19840056
Alignment:
Q  106 tgtgggatattgacttaaatcaaaggtgggtaaggagacatattacttttgcaagcacttttcctacttgagcatattgacttggaccgtgaaatttgtg 205  Q
    |||||||| ||||||| | ||  || ||||| |||||||||||||||||| |  |||| |||||||||||||||| |||| |||||| |||||| |||||    
T  19840156 tgtgggatgttgacttgattcggagatgggttaggagacatattacttttacgtgcacatttcctacttgagcatgttgatttggactgtgaaacttgtg 19840057  T
Q  206 t 206  Q
    |    
T  19840056 t 19840056  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 2352149 - 2352207
Alignment:
Q  261 caagtgcattaaaccataacaagtaataaagtattaagttatcgtctccatatggattg 319  Q
    ||||||||| ||| | ||||||||||||||||| ||||||||| |||||| ||||||||    
T  2352149 caagtgcatcaaatcgtaacaagtaataaagtagtaagttatcatctccacatggattg 2352207  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 516
Target Start/End: Complemental strand, 16985044 - 16984921
Alignment:
Q  397 ttgtgtgctcaatgcgagtaaaagtttacagaaaat---aagagtttgcttcaaaggttagacagcgattaggatt-tttgaatctcatatgccttcttt 492  Q
    ||||||||||||||||||||   ||||  |||||||   ||||||||| |||| |||||||||| ||||||||||| |||||||| | | || |||||||    
T  16985044 ttgtgtgctcaatgcgagtagtcgtttgaagaaaattaaaagagtttgtttcataggttagacatcgattaggattatttgaatcccctctgtcttcttt 16984945  T
Q  493 gtcaaagtaatacaatattcaata 516  Q
    |||  | |||||||| | ||||||    
T  16984944 gtcggattaatacaacagtcaata 16984921  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 8923216 - 8923249
Alignment:
Q  280 caagtaataaagtattaagttatcgtctccatat 313  Q
    |||||||||||||| |||||||||||||||||||    
T  8923216 caagtaataaagtagtaagttatcgtctccatat 8923249  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 21236425 - 21236392
Alignment:
Q  277 taacaagtaataaagtattaagttatcgtctcca 310  Q
    ||||||||||||||||| ||||||||||||||||    
T  21236425 taacaagtaataaagtaataagttatcgtctcca 21236392  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 13257490 - 13257414
Alignment:
Q  138 aggagacatattacttttgcaagcacttttcctacttgagcatattgacttggaccgtgaaatttgtgtgtctagat 214  Q
    |||||||||||||||||| |  ||||||||||||||||| | ||||||||||||| |||||| |||||  |||||||    
T  13257490 aggagacatattacttttactcgcacttttcctacttgaacctattgacttggactgtgaaacttgtgcatctagat 13257414  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 25369151 - 25369248
Alignment:
Q  129 aggtgggtaaggagacatattacttttgcaagcacttttcctacttgagcatattgacttggaccgtgaaatttgtgtgtctagattgcaagagtcaa 226  Q
    |||||||| | ||||||||||||||||    |||||| |||||||||||| | |||||||||||  ||||| |||||| ||| |||||| ||||||||    
T  25369151 aggtgggttaagagacatattacttttatgcgcacttatcctacttgagcctgttgacttggactatgaaacttgtgtatctggattgcgagagtcaa 25369248  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 23420507 - 23420549
Alignment:
Q  277 taacaagtaataaagtattaagttatcgtctccatatggattg 319  Q
    ||||||||||||||||| |||||||||||||||| | ||||||    
T  23420507 taacaagtaataaagtagtaagttatcgtctccacaaggattg 23420549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 10684232 - 10684195
Alignment:
Q  265 tgcattaaaccataacaagtaataaagtattaagttat 302  Q
    ||||||||||||||||||||||||||||| || |||||    
T  10684232 tgcattaaaccataacaagtaataaagtagtacgttat 10684195  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 13528960 - 13529017
Alignment:
Q  262 aagtgcattaaaccataacaagtaataaagtattaagttatcgtctccatatggattg 319  Q
    |||||||  ||| ||||| ||||||||||||| |||||||||||||||||||||||||    
T  13528960 aagtgcaccaaatcataataagtaataaagtagtaagttatcgtctccatatggattg 13529017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 13618499 - 13618556
Alignment:
Q  262 aagtgcattaaaccataacaagtaataaagtattaagttatcgtctccatatggattg 319  Q
    |||||||  ||| ||||| ||||||||||||| |||||||||||||||||||||||||    
T  13618499 aagtgcaccaaatcataataagtaataaagtagtaagttatcgtctccatatggattg 13618556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 226
Target Start/End: Complemental strand, 12847337 - 12847147
Alignment:
Q  37 atgaccatcaccagcgacatatgtcacctttacaataaaatcatgcatgaacaacaaacttttttcttt-tgtgggatattgacttaaatcaaaggtggg 135  Q
    ||||| ||||||  |||||| | |||||| ||||||||| | ||||| |||| |  |  |||| ||||| |||||||| | ||||| ||||| ||||| |    
T  12847337 atgactatcaccttcgacatctttcacctatacaataaattaatgcaagaaccatgatattttatctttgtgtgggatgtcgactttaatcagaggtgag 12847238  T
Q  136 taaggagacatattacttttgcaagcacttttcctacttgagcatattgacttggaccgtgaaatttgtgtgtctagattgcaagagtcaa 226  Q
    | |||| ||| |||| || | |  |||||||||| |||||||||| ||||||||||| |||||| ||| || ||| |||||  ||||||||    
T  12847237 ttaggaaacaaattaattgtacgcgcacttttcccacttgagcatgttgacttggactgtgaaacttgggtatctggattgtgagagtcaa 12847147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 9368287 - 9368412
Alignment:
Q  64 ctttacaataaaatcatgcatgaacaacaaacttttttcttt-tgtgggatattgacttaaatcaaaggtgggtaaggagacatattacttttgcaagca 162  Q
    |||||||||||| ||||| |||||  ||||  | || ||||| |||||||| |  |||| || | ||||||||| |||||||||||||||||| || | |    
T  9368287 ctttacaataaattcatgtatgaatgacaatatattgtctttgtgtgggatgtcaactttaaccgaaggtgggttaggagacatattacttttacacgta 9368386  T
Q  163 cttttcctacttgagcatattgactt 188  Q
    ||||||||||| || ||| |||||||    
T  9368387 cttttcctactcgatcatgttgactt 9368412  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 31275326 - 31275285
Alignment:
Q  278 aacaagtaataaagtattaagttatcgtctccatatggattg 319  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  31275326 aacaagtaataaagtagtaagttatcgtctccataaggattg 31275285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 25461279 - 25461239
Alignment:
Q  279 acaagtaataaagtattaagttatcgtctccatatggattg 319  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  25461279 acaagtaataaagtagtaagttatcgtctccaaatggattg 25461239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 19004574 - 19004616
Alignment:
Q  277 taacaagtaataaagtattaagttatcgtctccatatggattg 319  Q
    |||||| |||||||||| |||||||||||||| ||||||||||    
T  19004574 taacaaataataaagtagtaagttatcgtctctatatggattg 19004616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 19541840 - 19541782
Alignment:
Q  260 gcaagtgcattaaaccataacaagtaataaagtattaagttatcgtctccatatggatt 318  Q
    |||||||||  |||||||| ||| |||||||||| ||| |||||||||||| |||||||    
T  19541840 gcaagtgcaccaaaccatatcaaataataaagtagtaaattatcgtctccacatggatt 19541782  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 14294429 - 14294377
Alignment:
Q  138 aggagacatattacttttgcaagcacttttcctacttgagcatattgacttgg 190  Q
    |||||||||||||||||| |  |||||||||||| |||| | |||||||||||    
T  14294429 aggagacatattacttttacgtgcacttttcctagttgaccctattgacttgg 14294377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 313
Target Start/End: Complemental strand, 6073051 - 6073018
Alignment:
Q  280 caagtaataaagtattaagttatcgtctccatat 313  Q
    |||||||||| |||||||||||||||||||||||    
T  6073051 caagtaataatgtattaagttatcgtctccatat 6073018  T

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