View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7436_low_3 (Length: 456)
Name: NF7436_low_3
Description: NF7436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7436_low_3 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 38)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 40 - 445
Target Start/End: Original strand, 10034878 - 10035278
Alignment:
| Q |
40 |
atgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattgccagaaaa |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
10034878 |
atgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaaactctctgtttttggaattgtcatcaacttgagacattgccagaaaa |
10034977 |
T |
|
| Q |
140 |
ctgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtc |
239 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||| |||||||||||| | |||| | |
|
|
| T |
10034978 |
ctgcctcccttcctcgctgaaatcacttagattgtgggattgtaaaaagcttgagtcattaccagaagacagcctcactgactctcttagggaactctgc |
10035077 |
T |
|
| Q |
240 |
atttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaa |
339 |
Q |
| |
|
|||| | || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| | |||||||||| |
|
|
| T |
10035078 |
atttggaattgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatagatataaatcatgaagtcacaa |
10035177 |
T |
|
| Q |
340 |
tatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatat |
439 |
Q |
| |
|
||| || || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10035178 |
tatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatat |
10035272 |
T |
|
| Q |
440 |
tttcat |
445 |
Q |
| |
|
|||||| |
|
|
| T |
10035273 |
tttcat |
10035278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 32 - 445
Target Start/End: Original strand, 9980333 - 9980741
Alignment:
| Q |
32 |
tgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattg |
131 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | |||||| |||||||||||||| |
|
|
| T |
9980333 |
tgatctctctgaaatgaagtcctttgatggaaatgggctgcgacacctctcctctctccaaagtctctgttttttgttttgtcaacaacttgagacattg |
9980432 |
T |
|
| Q |
132 |
ccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9980433 |
ccagaaaactgcctcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaagg |
9980532 |
T |
|
| Q |
232 |
aactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacga |
331 |
Q |
| |
|
|||| ||| | | || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || | |
|
|
| T |
9980533 |
aactgtacatcgatggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaa |
9980632 |
T |
|
| Q |
332 |
agtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacct |
431 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9980633 |
agtcacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacct |
9980727 |
T |
|
| Q |
432 |
cttaatattttcat |
445 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9980728 |
cttaatattttcat |
9980741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 32 - 445
Target Start/End: Original strand, 10263568 - 10263976
Alignment:
| Q |
32 |
tgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattg |
131 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |
|
|
| T |
10263568 |
tgatctctctgaaatgaagtcctttgatggaaatgggcttcaacacctctcctctctccaatatctctgttttttcttttgtcatcaacttgagacattg |
10263667 |
T |
|
| Q |
132 |
ccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
10263668 |
ccagaaaactgcctcccttcctcgctgaaatcacttctattgcttggatgtgaaaagctagagtcattaccagaagacagcctcccttcctctcttaaac |
10263767 |
T |
|
| Q |
232 |
aactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacga |
331 |
Q |
| |
|
||| | || || |||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| ||||| |||||||| || |
|
|
| T |
10263768 |
tactcgctatcgagttttgcccattgttagaagaaaggtataaaaggaaggaacattagtccaaaattgctcacatccctttcataagaataaatgatga |
10263867 |
T |
|
| Q |
332 |
agtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacct |
431 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10263868 |
agtcacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacct |
10263962 |
T |
|
| Q |
432 |
cttaatattttcat |
445 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10263963 |
cttaatattttcat |
10263976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 421
Target Start/End: Original strand, 9841734 - 9842109
Alignment:
| Q |
41 |
tgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattgccagaaaac |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | ||||| | |||||| |||||||||||||| |
|
|
| T |
9841734 |
tgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaatatctcgatttttcgttttgtccacagcttgagtcattgccagaaaac |
9841833 |
T |
|
| Q |
141 |
tgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtca |
240 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| ||| || || |
|
|
| T |
9841834 |
tgcctcccttcctcgctgaaatcacttatattgtttcaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttgagcgtctgaaca |
9841933 |
T |
|
| Q |
241 |
tttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaat |
340 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| || |||||| ||| |
|
|
| T |
9841934 |
tttggggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctgtcatatggataaaccaccaagtcagaat |
9842033 |
T |
|
| Q |
341 |
atcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta |
421 |
Q |
| |
|
|| || || |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
9842034 |
atgat-ag-acaagttgtgttcccgtttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta |
9842109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 25 - 378
Target Start/End: Complemental strand, 10431250 - 10430898
Alignment:
| Q |
25 |
atatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttga |
124 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || |||| || ||||||| |
|
|
| T |
10431250 |
atatcactgatctctctgaaatgaagtcctttgatggaaatgggctgcgacacctctcctctctccaaactctctgtttttggttttgtgatcaacttga |
10431151 |
T |
|
| Q |
125 |
gacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactct |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| | |||| |||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10431150 |
gacattgccagaaaactgcctcccttcctcgctgaaatcacttgatttgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactct |
10431051 |
T |
|
| Q |
225 |
cttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataa |
324 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10431050 |
cttaagcaactgagaattagggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatagatataa |
10430951 |
T |
|
| Q |
325 |
atgacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgtt |
378 |
Q |
| |
|
|||| ||||||||||||| || || |||||||||||||||| ||||||||||||| |
|
|
| T |
10430950 |
atgatgaagtcacaatatgat-ag-acaagttgtgttccagttttcaggtatgtt |
10430898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 421
Target Start/End: Original strand, 10520361 - 10520736
Alignment:
| Q |
41 |
tgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattgccagaaaac |
140 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||| || ||||| | ||||||||||||||||||||||| |
|
|
| T |
10520361 |
tgaaatgaagtcctttgatggaaaagggcttcgtcacctctcctctctccaacgtctccgtttttgggattgtgaacaacttgagacattgccagaaaac |
10520460 |
T |
|
| Q |
141 |
tgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtca |
240 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| |||| ||||||| | |||||||||||||||||||||||||||||||| ||| ||| ||| |
|
|
| T |
10520461 |
tgcctcccttcctcgctgaaattacttgatttgtggaaatgtgaaaagcttaaatcattaccagaagacagcctccctgactctctgaagagactgctca |
10520560 |
T |
|
| Q |
241 |
tttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaat |
340 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| || |||||||||| |
|
|
| T |
10520561 |
tttgggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatcccagtcatatcaataaattaccaagtcacaat |
10520660 |
T |
|
| Q |
341 |
atcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta |
421 |
Q |
| |
|
|| || || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
10520661 |
atgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta |
10520736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 40 - 445
Target Start/End: Original strand, 10129797 - 10130190
Alignment:
| Q |
40 |
atgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattgccagaaaa |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
10129797 |
atgaaatgaagtcctttgatggaaatgggcttcgacacctcttctctctccaacatctcttcttttggaattgtcatcaacttgagacattgccagaaaa |
10129896 |
T |
|
| Q |
140 |
ctgcctcccttcctcgctgaaattacttcaattgtttcga-tgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagt |
238 |
Q |
| |
|
||||||||||||||||||||||| |||| | || || || ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
10129897 |
ctgcctcccttcctcgctgaaatcacttgactt-ttgggattgtgaaaagctagagtcattaccagaagacagcctccctgattctcttatgcaactgtg |
10129995 |
T |
|
| Q |
239 |
catttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcaca |
338 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||| | |||| | ||| |||| |
|
|
| T |
10129996 |
cattcaaggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctttcaaaaatat------caaaggcaca |
10130089 |
T |
|
| Q |
339 |
atatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaata |
438 |
Q |
| |
|
|||| || || |||||||||||||| ||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10130090 |
atatgat-ag-acaagttgtgttcccatttcaggtatgctcc-tagttcctaccagaaa---gccaataatcaatcctctgtacgacacacctcttaata |
10130183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 120 - 421
Target Start/End: Original strand, 9852832 - 9853128
Alignment:
| Q |
120 |
cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctg |
219 |
Q |
| |
|
|||||| |||| ||||||||||||||||| || |||||||||| |||| |||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9852832 |
cttgagtcattaccagaaaactgcctcccatcatcgctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctg |
9852931 |
T |
|
| Q |
220 |
actctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatata |
319 |
Q |
| |
|
|||| || ||| ||| | ||||| | ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
9852932 |
actcactgaagagactggacatttatggatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcataga |
9853031 |
T |
|
| Q |
320 |
tataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctg |
419 |
Q |
| |
|
||||||||| | || ||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
9853032 |
aataaatgaccaggttacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctg |
9853126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 26 - 363
Target Start/End: Original strand, 11772095 - 11772429
Alignment:
| Q |
26 |
tatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgag |
125 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||| | || ||| |
|
|
| T |
11772095 |
tatcattgatctctatgaaatgaagtcttttgatggaaatgggcttcgacacctctcctctctccaatatctctatttttggaattgtcaacagctcgag |
11772194 |
T |
|
| Q |
126 |
acattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctc |
225 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| ||| ||| | |||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
11772195 |
tcattgccagaaaactgcctcccttcctcgttgaaatcactttcatttcaaatgtgtgaggagcttgagtcattaccggaagacagcctccccgactctc |
11772294 |
T |
|
| Q |
226 |
ttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaa |
325 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
11772295 |
ttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcgctcacatccctgtcatagatataaa |
11772394 |
T |
|
| Q |
326 |
tgacgaagtcacaatatcatgagaacaagttgtgttcc |
363 |
Q |
| |
|
||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
11772395 |
tgaaaaagtcacaat---atgagaacaagctgtgttcc |
11772429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 10361016 - 10360658
Alignment:
| Q |
19 |
ctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctc-tgttttaggaattgtcata |
117 |
Q |
| |
|
||||||| ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||| |
|
|
| T |
10361016 |
ctctggaaatccatcatctctctgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctcgtattttttgaat-gtcgac |
10360918 |
T |
|
| Q |
118 |
aacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccc |
217 |
Q |
| |
|
| |||||| |||| ||||||||||||||||||||||||||||||| |||| ||| | | | ||| ||||||| | ||||||||||||||||||||||| |
|
|
| T |
10360917 |
agcttgagtcattaccagaaaactgcctcccttcctcgctgaaatcacttacattttatggttgtgaaaagcttaaatcattaccagaagacagcctccc |
10360818 |
T |
|
| Q |
218 |
tgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcata |
317 |
Q |
| |
|
||||||||||||| |||| | ||| | | || |||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| |||||| |
|
|
| T |
10360817 |
tgactctcttaaggaactggacatctatgattgcccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccccgtcata |
10360718 |
T |
|
| Q |
318 |
tatataaatgacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgtt |
378 |
Q |
| |
|
| ||||| ||| |||||||||||| || || |||||||||||||| | ||||||||||||| |
|
|
| T |
10360717 |
aaaataaacgaccaagtcacaatatgat-ag-acaagttgtgttcccgttttcaggtatgtt |
10360658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 26 - 363
Target Start/End: Complemental strand, 11779190 - 11778856
Alignment:
| Q |
26 |
tatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgag |
125 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||| |||| |||||||||| | || ||| |
|
|
| T |
11779190 |
tatcattgatctctatgaaatgaagtccttcgatggaaatgggcttcgacacctctcctctctcgaatatctctatttttggaattgtcaacagctcgag |
11779091 |
T |
|
| Q |
126 |
acattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctc |
225 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| ||| ||| | |||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
11779090 |
tcattgccagaaaactgcctcccttcctcgttgaaatcactttcatttcaaatgtgtgaggagcttgagtcattaccggaagacagcctccccgactctc |
11778991 |
T |
|
| Q |
226 |
ttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaa |
325 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | ||||| |
|
|
| T |
11778990 |
ttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcgctcacatccctgtcatagaaataaa |
11778891 |
T |
|
| Q |
326 |
tgacgaagtcacaatatcatgagaacaagttgtgttcc |
363 |
Q |
| |
|
||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
11778890 |
tgaaaaagtcacaat---atgagaacaagctgtgttcc |
11778856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 127 - 374
Target Start/End: Original strand, 10666497 - 10666742
Alignment:
| Q |
127 |
cattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctct |
226 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||| |||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10666497 |
cattaccagaagacagcctcccttcctcgctgaaatcacttgaattgtttgaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctct |
10666596 |
T |
|
| Q |
227 |
taagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaat |
326 |
Q |
| |
|
|||| |||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10666597 |
taaggaactgcacattgaggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaat |
10666696 |
T |
|
| Q |
327 |
gacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggta |
374 |
Q |
| |
|
|| |||||||||||| || || || ||||||||||| |||||||||| |
|
|
| T |
10666697 |
tacaaagtcacaatatgat-ag-acgagttgtgttcctgtttcaggta |
10666742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 127 - 413
Target Start/End: Original strand, 10583544 - 10583829
Alignment:
| Q |
127 |
cattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctct |
226 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||| ||||||||| | | ||| || || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10583544 |
cattaccagaagacagcctcccttcctcgctgaaatcacttcaatttgtgggttgtgtaagactcgagtcattaccagaagacagcctccctgactctct |
10583643 |
T |
|
| Q |
227 |
taagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaat |
326 |
Q |
| |
|
| ||| ||| ||| || |||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
10583644 |
tgagcgactgaccatccaattttgcccattgttagaagaaaggtataaaaggaatgaatattggtccaaaattgctcacatccctgtcatacaaataaat |
10583743 |
T |
|
| Q |
327 |
gacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgttccacagttcctaccagaaaactgccaataatcaat |
413 |
Q |
| |
|
|| |||||||||||| || || |||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10583744 |
cacaaagtcacaatatgat-ag-acaagttgtgttcccgttttcaggtatgttccacatttcctaccagaaaactgccaataatcaat |
10583829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 41 - 218
Target Start/End: Original strand, 10583389 - 10583566
Alignment:
| Q |
41 |
tgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattgccagaaaac |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
10583389 |
tgaaatgaagtcctttgatggaaatgggctgcgacacctctcctctctccaatatctctgttttttcatttgtcatcaacttgagacattgccagaaaac |
10583488 |
T |
|
| Q |
141 |
tgcctcccttcctcgctgaaattacttcaattgtttcga-tgtaaaaagctagagtcattaccagaagacagcctccct |
218 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||| | | || ||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
10583489 |
tgcctcccttcctcactgaaatcactttcatt-tatggattgtgaaaagcttgggtcattaccagaagacagcctccct |
10583566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 184 - 378
Target Start/End: Complemental strand, 10372961 - 10372768
Alignment:
| Q |
184 |
aaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaagga |
283 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||| ||| ||| |||||| | |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
10372961 |
aaaagcttgagtcattaccagaagacagcctcccttcctctctgaagagactggtcattatgggatgcccattgttagaagaaaggtataaaaggaagga |
10372862 |
T |
|
| Q |
284 |
acagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgtt |
378 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||| | ||||| ||| || ||||||||| || || |||||||||||||| | ||||||||||||| |
|
|
| T |
10372861 |
acattggtccaaaattgctcacatccccgtcataaaaataaacgaccaaatcacaatatgat-ag-acaagttgtgttcccgttttcaggtatgtt |
10372768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 10503442 - 10503584
Alignment:
| Q |
25 |
atatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttga |
124 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||| ||||||| | ||||| |
|
|
| T |
10503442 |
atatcagtgatctctatgaaatgaagtcctttgatggaaatgggcttcgacaaatctcctctctcgaaaatcttgaatttcttaattgtctacagcttga |
10503541 |
T |
|
| Q |
125 |
gacattgccagaaaactgcctcccttcctcgctgaaattactt |
167 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10503542 |
gtcattgccagaaaactgcctcccttcctcgctgaaattactt |
10503584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 9852615 - 9852746
Alignment:
| Q |
41 |
tgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattgccagaaaac |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| | |||||| | |||| | |||||||||||||| |
|
|
| T |
9852615 |
tgaaatgaagtcctttgatggaaatgggcttcgacacctcttctctctccaatatctctattttgcgggttgtcaacagcttgggtcattgccagaaaac |
9852714 |
T |
|
| Q |
141 |
tgcctcccttcctcgctgaaattacttcaatt |
172 |
Q |
| |
|
||| |||||||||| ||||||| |||| |||| |
|
|
| T |
9852715 |
tgcttcccttcctcactgaaatcacttaaatt |
9852746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 41 - 376
Target Start/End: Original strand, 10531657 - 10531989
Alignment:
| Q |
41 |
tgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattgccagaaaac |
140 |
Q |
| |
|
|||||| ||||| ||||| |||||||| ||||||||||||||||||||| || |||| ||| ||||| | |||||| ||||||||||||| |
|
|
| T |
10531657 |
tgaaataaagtcatttgaaggaaatggacttcgacacctctcctctctcaaaaatcttcactttcttaattgcttggagcttgagtcattgccagaaaat |
10531756 |
T |
|
| Q |
141 |
tgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtca |
240 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| | | ||| || || ||||||||||||||||||||||||||| ||||||||| |||| ||| |
|
|
| T |
10531757 |
tgcctcccttcctcgctgaagtcacttcaattttcgagttgtgtaagacttgagtcattaccagaagacagcctcccttcctctcttaa---actactca |
10531853 |
T |
|
| Q |
241 |
ttttt-agatgt--ccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcac |
337 |
Q |
| |
|
| | || | | |||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||| ||||| | |||| || |
|
|
| T |
10531854 |
ctatcgagttttgcccattgttagaagaaaggtataaaaggaaggaaaattggtccaaaatttctcacatccctgtcataataataaacaagcaagttac |
10531953 |
T |
|
| Q |
338 |
aatatcatgagaacaagttgtgttccagtttcaggtatg |
376 |
Q |
| |
|
||| |||| |||||||||||||| |||||||||||| |
|
|
| T |
10531954 |
aat---atgaagacaagttgtgttcccgtttcaggtatg |
10531989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 10373050 - 10372916
Alignment:
| Q |
26 |
tatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgag |
125 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||| | || |||||| |
|
|
| T |
10373050 |
tatcaattatctctctgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctcaaaaatctctatttttttaattgtgaaaagcttgag |
10372951 |
T |
|
| Q |
126 |
acattgccagaaaactgcctcccttcctcgctgaa |
160 |
Q |
| |
|
|||| |||||| || ||||||||||||| ||||| |
|
|
| T |
10372950 |
tcattaccagaagacagcctcccttcctctctgaa |
10372916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 107 - 316
Target Start/End: Original strand, 10091937 - 10092146
Alignment:
| Q |
107 |
gaattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaa |
206 |
Q |
| |
|
||||||| | || |||||| |||| ||||| ||||||||||| ||||||||||||| |||| |||| | ||||||| ||| || |||||||||||| |
|
|
| T |
10091937 |
gaattgtgaaaagcttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaa |
10092036 |
T |
|
| Q |
207 |
gacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcaca |
306 |
Q |
| |
|
|||||||||||| ||||||| || |||| | |||| |||||||||| |||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
10092037 |
gacagcctcccttcatctcttatcactctgtacattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcaca |
10092136 |
T |
|
| Q |
307 |
tccctgtcat |
316 |
Q |
| |
|
|||||||||| |
|
|
| T |
10092137 |
tccctgtcat |
10092146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 107 - 316
Target Start/End: Original strand, 10198819 - 10199028
Alignment:
| Q |
107 |
gaattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaa |
206 |
Q |
| |
|
||||||| | || |||||| |||| ||||| ||||||||||| ||||||||||||| |||| |||| | ||||||| ||| || |||||||||||| |
|
|
| T |
10198819 |
gaattgtgaaaagcttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaa |
10198918 |
T |
|
| Q |
207 |
gacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcaca |
306 |
Q |
| |
|
|||||||||||| ||||||| || |||| | |||| |||||||||| |||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
10198919 |
gacagcctcccttcatctcttatcactctgtacattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcaca |
10199018 |
T |
|
| Q |
307 |
tccctgtcat |
316 |
Q |
| |
|
|||||||||| |
|
|
| T |
10199019 |
tccctgtcat |
10199028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 374
Target Start/End: Original strand, 10503681 - 10503857
Alignment:
| Q |
195 |
tcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtcca |
294 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| ||| ||||| ||||| ||| |||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
10503681 |
tcattaccagaagacagccttcctgattctcttaagctactgatcattcaaagatgcccaacattagaagaaaggtataaaaggaaggaacattggtcca |
10503780 |
T |
|
| Q |
295 |
aaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggta |
374 |
Q |
| |
|
||||| ||||||||||||||||| | ||| ||| |||||||||| ||||| ||| | |||||||| |||||||||| |
|
|
| T |
10503781 |
aaatttctcacatccctgtcatagaaatagatggacaagtcacaat---atgaggacaggctgtgttcccgtttcaggta |
10503857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 32 - 342
Target Start/End: Original strand, 10192963 - 10193272
Alignment:
| Q |
32 |
tgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattg |
131 |
Q |
| |
|
||||||| || | |||||||||||||||||||||||||||| ||||||||||| |||| || |||| ||| | |||||||| |||||||| |||| |
|
|
| T |
10192963 |
tgatctctataacatgaagtcctttgatggaaatgggcttcaacacctctcctttctcgaa-atcttcactttcgtaattgtcaacaacttgagccattt |
10193061 |
T |
|
| Q |
132 |
ccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagc |
231 |
Q |
| |
|
|| ||||| ||| | |||||||||||||||| |||| || | | | ||| ||| || || |||||||| |||||| |||||||||| ||||| |||| |
|
|
| T |
10193062 |
cctgaaaattgcgttccttcctcgctgaaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaagactgcctccctgattctctgaagc |
10193161 |
T |
|
| Q |
232 |
aactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacga |
331 |
Q |
| |
|
||| ||| | | || |||||| |||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| ||| |
|
|
| T |
10193162 |
gtctaagcatcgtatttttccctttgttaaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcga |
10193261 |
T |
|
| Q |
332 |
agtcacaatat |
342 |
Q |
| |
|
| ||||||||| |
|
|
| T |
10193262 |
aatcacaatat |
10193272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 10091668 - 10091784
Alignment:
| Q |
45 |
atgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattgccagaaaactgcc |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | | |||| | ||| || |||||||||||||||||| |
|
|
| T |
10091668 |
atgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacgtctcgatttctgtcaatgtcgacagcttcagtcattgccagaaaactgcc |
10091767 |
T |
|
| Q |
145 |
tcccttcctcgctgaaa |
161 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10091768 |
tcccttcctcgctgaaa |
10091784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 10198550 - 10198666
Alignment:
| Q |
45 |
atgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattgccagaaaactgcc |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | | |||| | ||| || |||||||||||||||||| |
|
|
| T |
10198550 |
atgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacgtctcgatttctgtcaatgtcgacagcttcagtcattgccagaaaactgcc |
10198649 |
T |
|
| Q |
145 |
tcccttcctcgctgaaa |
161 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10198650 |
tcccttcctcgctgaaa |
10198666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 32 - 342
Target Start/End: Original strand, 10086043 - 10086352
Alignment:
| Q |
32 |
tgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattg |
131 |
Q |
| |
|
||||||| || | |||||||||||||||||||||||||||| ||||||||||| |||| || |||| ||| | |||||||| |||||||| |||| |
|
|
| T |
10086043 |
tgatctctataacatgaagtcctttgatggaaatgggcttcaacacctctcctttctcgaa-atcttcactttcgtaattgtcaacaacttgagccattt |
10086141 |
T |
|
| Q |
132 |
ccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagc |
231 |
Q |
| |
|
|| ||||| ||| | |||||||||||||||| |||| || | | | ||| ||| || || |||||||| |||||| |||||||||| ||||| |||| |
|
|
| T |
10086142 |
cctgaaaattgcgttccttcctcgctgaaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaagactgcctccctgattctctgaagc |
10086241 |
T |
|
| Q |
232 |
aactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacga |
331 |
Q |
| |
|
|| ||| | | || |||||| |||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| ||| |
|
|
| T |
10086242 |
gtctgagcatcgtatttttccctttgttaaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcga |
10086341 |
T |
|
| Q |
332 |
agtcacaatat |
342 |
Q |
| |
|
| ||||||||| |
|
|
| T |
10086342 |
aatcacaatat |
10086352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 317
Target Start/End: Original strand, 10680534 - 10680731
Alignment:
| Q |
120 |
cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctg |
219 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||||||||| ||||||||| || | ||| || || |||| ||||||||||||||||||||| |
|
|
| T |
10680534 |
cttgagtcatttccagaaaattgcctcccttcctcgctgaaatcacttcaatttttgagttgtgtaagacttgagttgttaccagaagacagcctccctt |
10680633 |
T |
|
| Q |
220 |
actctcttaagcaactag---tcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat |
316 |
Q |
| |
|
||||||||| | ||| ||| ||| || |||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
10680634 |
cctctcttaaactactcactatcaagttt---tgcccattgttagaagaaaggtataaaaggaatgaacatcggtccaaaatttctcacatccctgtcat |
10680730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 445
Target Start/End: Complemental strand, 10430786 - 10430742
Alignment:
| Q |
401 |
gccaataatcaatcatctgtacgacacacctcttaatattttcat |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10430786 |
gccaataatcaatcatctgtacgacacacctcttaatattttcat |
10430742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 13852636 - 13852563
Alignment:
| Q |
41 |
tgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtc |
114 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |||||||||||| | ||||| | ||| ||||||||| |
|
|
| T |
13852636 |
tgaaatgaagtctttcgatggaaatgggcttcgacatctctcctctctcaacaatctcggattttggaattgtc |
13852563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 10666347 - 10666390
Alignment:
| Q |
46 |
tgaagtcctttgatggaaatgggcttcgacacctctcctctctc |
89 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
10666347 |
tgaagtcctttaatggaaatgggcttctacacctctcctctctc |
10666390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 8585578 - 8585531
Alignment:
| Q |
280 |
aggaacagtggtccaaaattgctcacatccctgtcatatatataaatg |
327 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||| ||||||||| |
|
|
| T |
8585578 |
aggaacattggtccaacattgctcacatacctgtcataaatataaatg |
8585531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 10892194 - 10892241
Alignment:
| Q |
41 |
tgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctct |
88 |
Q |
| |
|
||||||||| | ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
10892194 |
tgaaatgaaatgcttaggtggaaatgggcttcgacacctctcctctct |
10892241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 10091812 - 10091850
Alignment:
| Q |
120 |
cttgagacattgccagaaaactgcctcccttcctcgctg |
158 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
10091812 |
cttgagtcattgccagaaaactgtctcccttcctcgctg |
10091850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 10198694 - 10198732
Alignment:
| Q |
120 |
cttgagacattgccagaaaactgcctcccttcctcgctg |
158 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
10198694 |
cttgagtcattgccagaaaactgtctcccttcctcgctg |
10198732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 9852775 - 9852860
Alignment:
| Q |
132 |
ccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccc |
217 |
Q |
| |
|
|||| |||||||||||| || |||||||||| |||| |||| || ||||| ||||| ||||||||||||||| || ||||||| |
|
|
| T |
9852775 |
ccagtaaactgcctcccatcatcgctgaaatcacttaaatttgttgattgtaagaagcttgagtcattaccagaaaactgcctccc |
9852860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 11128192 - 11128163
Alignment:
| Q |
59 |
tggaaatgggcttcgacacctctcctctct |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11128192 |
tggaaatgggcttcgacacctctcctctct |
11128163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 11157183 - 11157154
Alignment:
| Q |
59 |
tggaaatgggcttcgacacctctcctctct |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11157183 |
tggaaatgggcttcgacacctctcctctct |
11157154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 10680455 - 10680503
Alignment:
| Q |
41 |
tgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctc |
89 |
Q |
| |
|
|||||| ||||| |||| |||||||| ||||||||||||||||||||| |
|
|
| T |
10680455 |
tgaaataaagtcacttgaaggaaatggacttcgacacctctcctctctc |
10680503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 32 - 445
Target Start/End: Complemental strand, 54804 - 54396
Alignment:
| Q |
32 |
tgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattg |
131 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | |||||| |||||||||||||| |
|
|
| T |
54804 |
tgatctctctgaaatgaagtcctttgatggaaatgggctgcgacacctctcctctctccaaagtctctgttttttgttttgtcaacaacttgagacattg |
54705 |
T |
|
| Q |
132 |
ccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54704 |
ccagaaaactgcctcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaagg |
54605 |
T |
|
| Q |
232 |
aactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacga |
331 |
Q |
| |
|
|||| ||| | | || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || | |
|
|
| T |
54604 |
aactgtacatcgatggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaa |
54505 |
T |
|
| Q |
332 |
agtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacct |
431 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54504 |
agtcacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacct |
54410 |
T |
|
| Q |
432 |
cttaatattttcat |
445 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
54409 |
cttaatattttcat |
54396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 33 - 326
Target Start/End: Original strand, 26909756 - 26910049
Alignment:
| Q |
33 |
gatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctgttttaggaattgtcataaacttgagacattgc |
132 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| |||||| | |||| || |||| | |
|
|
| T |
26909756 |
gatctctatgaaatgaagtcctttgatggaaatgggcttcgacgcctctcctctctccaaaatcttcactttattaattgtgaacaactcaagtcatttc |
26909855 |
T |
|
| Q |
133 |
cagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagca |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | | | ||| | || || |||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
26909856 |
cagaaaactgcctcccttcctcgctgaaatatcttcaattttatggctgtgagaaacttgagtcattaccagaagacagcctccccgactctcttgagat |
26909955 |
T |
|
| Q |
233 |
actagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaat |
326 |
Q |
| |
|
|| | || | || |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
26909956 |
gctggaaatgtcatcttgcccattgttagaagaaaggtacaaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaat |
26910049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 118 - 342
Target Start/End: Complemental strand, 17850039 - 17849815
Alignment:
| Q |
118 |
aacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccc |
217 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| ||||||| ||| |||| | | ||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
17850039 |
aacttgagtcattgccacaaaactgcctcccttcctcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctccc |
17849940 |
T |
|
| Q |
218 |
tgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcata |
317 |
Q |
| |
|
| ||||||||||| ||| ||||||| |||| || | |||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17849939 |
ttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata |
17849840 |
T |
|
| Q |
318 |
tatataaatgacgaagtcacaatat |
342 |
Q |
| |
|
| || | ||| |||||||||||| |
|
|
| T |
17849839 |
gaaattgaggaccaagtcacaatat |
17849815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 342
Target Start/End: Complemental strand, 44954854 - 44954552
Alignment:
| Q |
40 |
atgaaatgaagtcctttgatggaaatgggcttcgacacct-ctcctctctccaacatctctgttttaggaattgtcataaacttgagacattgccagaaa |
138 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |||||| |||||||||| || ||||| ||| | || ||||| | |||||| |||| ||||||| |
|
|
| T |
44954854 |
atgaaatgaagtcctttcaaggaaatgggcttcaacacctactcctctctcgaaaatctccactttcgtaactgtcaacagcttgagtcatttccagaaa |
44954755 |
T |
|
| Q |
139 |
actgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagt |
238 |
Q |
| |
|
|||| || |||||||||||||||| ||||||||| || ||| || | || ||||| ||||||||||| |||||||| |||||||||| | ||| || |
|
|
| T |
44954754 |
actgtcttccttcctcgctgaaatcacttcaatttttgttttgtgaaga-cttgagtcgttaccagaagaaagcctccccaactctcttaatcgactggt |
44954656 |
T |
|
| Q |
239 |
catttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcaca |
338 |
Q |
| |
|
||||| |||| || | | || ||||||||||| |||||||||||| ||||||||||||||| | || | ||||||| | ||| ||| | |||||||| |
|
|
| T |
44954655 |
catttggcgatgccctgtatcagaagaaaggtatagaaggaaggaacattggtccaaaattgctaaaattcatgtcatagaaatagatggccaagtcaca |
44954556 |
T |
|
| Q |
339 |
atat |
342 |
Q |
| |
|
|||| |
|
|
| T |
44954555 |
atat |
44954552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 11487907 - 11487953
Alignment:
| Q |
43 |
aaatgaagtcctttgatggaaatgggcttcgacacctctcctctctc |
89 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||| |||||||||||||| |
|
|
| T |
11487907 |
aaatgaagccctatgatggaagtgggcttcgatacctctcctctctc |
11487953 |
T |
|
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