View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7436_low_5 (Length: 397)
Name: NF7436_low_5
Description: NF7436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7436_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 34043450 - 34043815
Alignment:
| Q |
1 |
tagttaatcttccttatgattataatgttcattagatgttggaaaatgaagaagagagtagacatggacatgttatacagaactgagaatatcatttatg |
100 |
Q |
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| T |
34043450 |
tagttaatcttccttatgattataatgttcatgagatgttggaaaatgaagaagagagtagacatggacatgttatgcagaactgagaatatcatttatg |
34043549 |
T |
|
| Q |
101 |
ctacaaagatttgtatattgttgtatatttttcttgttaaatcgatttatggattttgtgtttggaatggcttcaaatggtacctgtggttgaaggtcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
34043550 |
ctacaaagatttgtatattgttgtatatttttcttgttaaatcgatttatggatattgtgtttggaatggcttcaaatggtacatgtggctgaaggtcta |
34043649 |
T |
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| Q |
201 |
agatgtatttcgtcctaatgtgacattgggaaattactttcnnnnnnnnnnataaatgcaagcttaatggtttactttcattggtataaacaaactaaga |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34043650 |
agatgtatttcgtcctaatgtgacattgtgaaattactat----tttttttataaatacaagcttaatggtttactttcattggtacaaacaaactaaga |
34043745 |
T |
|
| Q |
301 |
aaaactaaggtagttcaaatacatttttgaacacaaactttataggagagaaaaggttcaaacaatttag |
370 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34043746 |
aaaactaaggtagttcaaatacatttttcaacacaaactttataggagagaaaatgttcaaacaatttag |
34043815 |
T |
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