View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7436_low_7 (Length: 343)
Name: NF7436_low_7
Description: NF7436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7436_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 34043407 - 34043088
Alignment:
| Q |
1 |
tcatcatgttaatggagaaacgttcaagatatggaatcatccaatttctataatctggatttagaatccatgagtaacaaaactgtagtgacttccacac |
100 |
Q |
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| T |
34043407 |
tcatcatgttaatggagaaacgttcaagatatggaatcatccaatttctataatctggatttagaatccatgagtaacaaaactgtagtgacttccacac |
34043308 |
T |
|
| Q |
101 |
atgaatgcatacaacattaggtaacttttggcctttcaagcaaaggcctgaatttttaccttgtatttgggaaaaacgtgacctaaatattgcaaggatt |
200 |
Q |
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| T |
34043307 |
atgaatgcatacaacattaggtaacttttggcctttcaagcaaaggcctgaatttttaccttgtatttgggaaaaacgtgacctaaatattgcaaggatt |
34043208 |
T |
|
| Q |
201 |
gcatagcacaaatcattaaggtctttgatatttgtgagtattgagttcatggagattatatcacctgtactaaaatttatagttgaagaaccatctcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34043207 |
gcatagcacaaatcattaaggtctttgatatttgtgagtattgagttcatggagattatatcacctgtactaaaatttatagttgaagaaccatctcttg |
34043108 |
T |
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| Q |
301 |
attctccagcatatgcattg |
320 |
Q |
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| T |
34043107 |
attctccagcatatgcattg |
34043088 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 5900016 - 5899930
Alignment:
| Q |
66 |
atccatgagtaacaaaactgtagtgacttccacacatgaatgcatacaacattaggtaacttttggcctttcaagcaaaggcctgaa |
152 |
Q |
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| T |
5900016 |
atccatgagtaacaaaaatgaagagatttccacacatgaatgcacacaactattggtctgctttgtcctttcaagcaaagacctgaa |
5899930 |
T |
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