View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7437_low_2 (Length: 228)
Name: NF7437_low_2
Description: NF7437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7437_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 3750477 - 3750720
Alignment:
| Q |
1 |
ttatttgataaaaagagttcatattctattatttttaaaattaatgttgtctatgattaaattgattattaattgaaaatcaagtatttaag-------- |
92 |
Q |
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| T |
3750477 |
ttatttgataaaaagagttcatattctattatttttaaaattaatgttgtctatgattaaattgattattaattgaaaatcaagtatttaagaagaatgt |
3750576 |
T |
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| Q |
93 |
--------aagaatgttgactaagattacataatatgtttcggttaaggtgaaatcgatggcgatgcttgatttcgatagaacaatattttattatattc |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3750577 |
tgactaagaagaatgttgactaagattacataatatgtttcggttaaggtgaaatcgatggcgatgcttgatttcgatagaacaatattttattatactc |
3750676 |
T |
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| Q |
185 |
tatttaactcgcggtcaaactctgaataccaatacatatttccc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3750677 |
tatttaactcgcggtcaaactctgaataccaatacatatttccc |
3750720 |
T |
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