View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7438_high_3 (Length: 403)

Name: NF7438_high_3
Description: NF7438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7438_high_3
NF7438_high_3
[»] chr5 (5 HSPs)
chr5 (10-241)||(15216553-15216785)
chr5 (309-397)||(15216397-15216485)
chr5 (94-175)||(8151133-8151215)
chr5 (125-238)||(23418414-23418528)
chr5 (124-240)||(33793081-33793198)
[»] chr4 (6 HSPs)
chr4 (94-240)||(54273444-54273592)
chr4 (101-187)||(10777940-10778027)
chr4 (13-77)||(23805170-23805235)
chr4 (10-77)||(6355197-6355265)
chr4 (113-183)||(35232874-35232945)
chr4 (13-54)||(11694720-11694761)
[»] chr3 (5 HSPs)
chr3 (94-193)||(32072982-32073081)
chr3 (13-55)||(25979640-25979682)
chr3 (16-84)||(21080604-21080673)
chr3 (16-84)||(21085193-21085262)
chr3 (13-76)||(17914474-17914538)
[»] chr6 (4 HSPs)
chr6 (94-195)||(6267418-6267520)
chr6 (94-241)||(15837209-15837356)
chr6 (13-82)||(8754286-8754356)
chr6 (20-54)||(13737665-13737699)
[»] chr2 (6 HSPs)
chr2 (94-163)||(16638427-16638496)
chr2 (14-53)||(39529780-39529819)
chr2 (13-66)||(23479762-23479816)
chr2 (16-84)||(45469533-45469602)
chr2 (16-84)||(45702558-45702627)
chr2 (30-77)||(6695362-6695410)
[»] chr8 (6 HSPs)
chr8 (99-240)||(45366779-45366922)
chr8 (172-240)||(11219469-11219537)
chr8 (10-56)||(9741523-9741569)
chr8 (94-175)||(35687916-35687998)
chr8 (124-195)||(13325747-13325819)
chr8 (13-57)||(14005778-14005822)
[»] chr7 (1 HSPs)
chr7 (97-154)||(20482887-20482945)
[»] chr1 (6 HSPs)
chr1 (10-52)||(14341550-14341592)
chr1 (139-240)||(26344569-26344671)
chr1 (16-84)||(26588736-26588805)
chr1 (94-131)||(33770146-33770183)
chr1 (120-184)||(50311133-50311198)
chr1 (172-241)||(25559532-25559601)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 15216785 - 15216553
Alignment:
Q  10 gagatgatacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttctgaagaaaacatgtcctttctatgagtacta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  15216785 gagatgatacatgtgggagccttgaagaagaaaagaaaatagactgggagagagatcatgacaaacttctgaagaaaacatgtcctttctatgaatacta 15216686  T
Q  109 ggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacataaaaccgcaaaccgaaccgaaccacatggttgagtnn 208  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||      
T  15216685 ggttggtgacctaagtttaattagtgtttctcttatgttgcgattttgtttggctgctaacataaaaccgcaaaccgaaccgaaccacatggttgagtaa 15216586  T
Q  209 nnnnntgatccgaatacatccgaaccaaatgca 241  Q
         ||||||||||||||||||||||||||||    
T  15216585 aaaaatgatccgaatacatccgaaccaaatgca 15216553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 309 - 397
Target Start/End: Complemental strand, 15216485 - 15216397
Alignment:
Q  309 acaccgttaatttaactccannnnnnncaagtttaatcaattttaacgtgaaagcttggaagtttttaatatttcatttgagtggttaa 397  Q
    |||||||||||||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15216485 acaccgttaatttaaccccatttttttcaagtttaatcaattttaacgtgaaagcttggaagtttttaatatttaatttgagtggttaa 15216397  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 8151133 - 8151215
Alignment:
Q  94 tttctatgagtactaggttgg-tgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacataaaa 175  Q
    ||||||||||||||||||||| ||||  ||||||||||| | |||||||||||||| | ||| ||| | ||||||| ||||||    
T  8151133 tttctatgagtactaggttgggtgacacaagtttaattagtatttctcttatgttgcgatttggttcgattgctaaaataaaa 8151215  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 23418414 - 23418528
Alignment:
Q  125 ttaattactgtttctcttatgttgtggttttgttgggttgctaacataaaa-ccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaat 223  Q
    ||||||| ||||| |||||||||| ||||| ||| ||| | ||| |||||| || ||||||||||| ||||||  ||||||||       ||||||||||    
T  23418414 ttaattaatgtttttcttatgttgcggtttggttcggtcggtaaaataaaaacctcaaaccgaaccaaaccacgcggttgagtaataaaatgatccgaat 23418513  T
Q  224 acatccgaaccaaat 238  Q
    | |||||||||||||    
T  23418514 atatccgaaccaaat 23418528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 33793081 - 33793198
Alignment:
Q  124 tttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaa 222  Q
    |||||||| ||||| |||||| |||  |||| ||| ||||| ||| || ||||||||||||| || | ||||||| ||||||||       ||||| |||    
T  33793081 tttaattagtgtttttcttatattgcagtttggtttggttgataaaatcaaaaccgcaaaccaaatcaaaccacacggttgagtaaaaaaatgatctgaa 33793180  T
Q  223 tacatccgaaccaaatgc 240  Q
    ||||||||||||||||||    
T  33793181 tacatccgaaccaaatgc 33793198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 54273592 - 54273444
Alignment:
Q  94 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaa 192  Q
    ||||| ||||||||||| |||||| ||||||||| ||| |||||||||||||||| ||||| ||| ||||||||| || ||||||||||||| |||||||    
T  54273592 tttctctgagtactaggctggtgaactaagtttagttagtgtttctcttatgttgcggtttggttcggttgctaaaataaaaaccgcaaaccaaaccgaa 54273493  T
Q  193 ccacatggttgagt-nnnnnnntgatccgaatacatccgaaccaaatgc 240  Q
     ||   ||||||||        |||||||||||||||||||||||||||    
T  54273492 tcatgcggttgagtaaaaaaaatgatccgaatacatccgaaccaaatgc 54273444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 10778027 - 10777940
Alignment:
Q  101 gagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaa 187  Q
    |||||||||||| |||| ||||||||||||| ||||| |||||||||||||||| ||| ||||||||| || |||||||||| |||||    
T  10778027 gagtactaggtttgtgatctaagtttaattagtgtttatcttatgttgtggtttggttcggttgctaaaataaaaaccgcaagccgaa 10777940  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 23805235 - 23805170
Alignment:
Q  13 atgatacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttc 77  Q
    ||||||||||||| ||||||||||||| ||||||||||||| || | |||||||| ||||||||||    
T  23805235 atgatacatgtggaagccttgaagaaggaaagaaaatagaccggaaaagaggacaagacaaacttc 23805170  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 6355265 - 6355197
Alignment:
Q  10 gagatgatacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttc 77  Q
    |||||||||||||  |||||||||||||| |||||||||||||| || ||||| |||| |||| |||||    
T  6355265 gagatgatacatgcaggagccttgaagaacaaaagaaaatagaccggaagagaagacaagacagacttc 6355197  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 35232945 - 35232874
Alignment:
Q  113 ggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaac 183  Q
    |||||| |||||||||||| ||||| |||||||||| ||||| ||| ||||| ||| || ||||||||||||    
T  35232945 ggtgacataagtttaattagtgtttttcttatgttgcggtttagttcggttgataaaataaaaaccgcaaac 35232874  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 11694720 - 11694761
Alignment:
Q  13 atgatacatgtgggagccttgaagaagaaaagaaaatagact 54  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||    
T  11694720 atgatacatgtgggagccttgtagaaggaaagaaagtagact 11694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 32073081 - 32072982
Alignment:
Q  94 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacataaaaccgcaaaccgaaccgaac 193  Q
    ||||||||||||||||||| ||| ||||| |||||||| ||||| |||| ||||| | ||| |||  |||||||| ||||||||||||||||||||||||    
T  32073081 tttctatgagtactaggtttgtgtcctaaatttaattagtgtttttcttgtgttgcgatttggttcagttgctaaaataaaaccgcaaaccgaaccgaac 32072982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 25979640 - 25979682
Alignment:
Q  13 atgatacatgtgggagccttgaagaagaaaagaaaatagactg 55  Q
    |||||||||| | |||||||||||||| |||||||||||||||    
T  25979640 atgatacatgagagagccttgaagaaggaaagaaaatagactg 25979682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 21080673 - 21080604
Alignment:
Q  16 atacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttctgaagaa 84  Q
    |||||||  ||||||||||||||| ||||||||||||| || | |||||||| |||||| ||| ||||||    
T  21080673 atacatgcaggagccttgaagaaggaaagaaaatagaccggtaaagaggacaagacaaaattcggaagaa 21080604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 21085262 - 21085193
Alignment:
Q  16 atacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttctgaagaa 84  Q
    |||||||  ||||||||||||||| ||||||||||||| || | |||||||| |||||| ||| ||||||    
T  21085262 atacatgcaggagccttgaagaaggaaagaaaatagaccggtaaagaggacaagacaaaattcggaagaa 21085193  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 17914474 - 17914538
Alignment:
Q  13 atgatacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaactt 76  Q
    ||||||| || |||||| ||||||||| ||||||||||||| || |||||||||| |||| ||||    
T  17914474 atgatacctgcgggagctttgaagaaggaaagaaaatagaccggaagagaggacaagacagactt 17914538  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 6267418 - 6267520
Alignment:
Q  94 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaa 192  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| ||||| ||| ||||  ||| || ||||||||||||| |||| ||    
T  6267418 tttctatgagtactaggtttgtgacctaagtttagttaatgtttctcttatgttgcggtttggtttggtttttaaaataaaaaccgcaaaccaaaccaaa 6267517  T
Q  193 cca 195  Q
    |||    
T  6267518 cca 6267520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 15837356 - 15837209
Alignment:
Q  94 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaa 192  Q
    ||||||||| |||||||||| |  |||||||||||||| ||||| |||||||||| ||||| ||| ||||||||| || |||||| |||||| |||||||    
T  15837356 tttctatgaatactaggttg-tatcctaagtttaattaatgtttttcttatgttgcggtttggttcggttgctaaaataaaaaccacaaaccaaaccgaa 15837258  T
Q  193 ccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaatgca 241  Q
    |||  ||||| ||        |||||| ||| |||||||||||||||||    
T  15837257 ccatgtggttaaggaaaaatatgatccaaattcatccgaaccaaatgca 15837209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 8754286 - 8754356
Alignment:
Q  13 atgatacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttctgaag 82  Q
    ||||||| || |||||||||||||||  ||||||||||||| || |||||||||| |||| ||||| ||||    
T  8754286 atgatacctgcgggagccttgaagaaagaaagaaaatagaccggaagagaggacaagacagacttcagaag 8754356  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 13737665 - 13737699
Alignment:
Q  20 atgtgggagccttgaagaagaaaagaaaatagact 54  Q
    |||||||||||||||||||| ||||||||||||||    
T  13737665 atgtgggagccttgaagaaggaaagaaaatagact 13737699  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 16638427 - 16638496
Alignment:
Q  94 tttctatgagtactaggttggtgacctaagtttaattactgtttctcttatgttgtggttttgttgggtt 163  Q
    |||||| |||||||||||  ||||||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  16638427 tttctaggagtactaggtctgtgacctaaatttaattagtgtttctcttatgttgcggttttgtttggtt 16638496  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 39529780 - 39529819
Alignment:
Q  14 tgatacatgtgggagccttgaagaagaaaagaaaatagac 53  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  39529780 tgatacatgtgggagccttgaagaaggaaagaaagtagac 39529819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 23479816 - 23479762
Alignment:
Q  13 atgatacatgtgggagccttgaagaagaaaagaaaatagact-ggagagaggaca 66  Q
    ||||||||||  ||||||||||||||| |||||||||||| | ||||||||||||    
T  23479816 atgatacatgcaggagccttgaagaaggaaagaaaatagattgggagagaggaca 23479762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 45469533 - 45469602
Alignment:
Q  16 atacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttctgaagaa 84  Q
    |||| ||| ||||||||||||||| ||||||| || || || ||||||||||||| ||||||| ||||||    
T  45469533 atacctgtaggagccttgaagaaggaaagaaagtaaaccggaagagaggacatgaaaaacttcagaagaa 45469602  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 45702558 - 45702627
Alignment:
Q  16 atacatgtgggagccttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttctgaagaa 84  Q
    |||| ||| ||||||||||||||| ||||||| || || || ||||||||||||||| ||||| ||||||    
T  45702558 atacctgtaggagccttgaagaaggaaagaaagtaaaccggaagagaggacatgacagacttcagaagaa 45702627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 6695410 - 6695362
Alignment:
Q  30 cttgaagaagaaaagaaaatagactgg-agagaggacatgacaaacttc 77  Q
    |||||||||||||| || ||||||||| ||||||||||||||| |||||    
T  6695410 cttgaagaagaaaacaagatagactggtagagaggacatgacacacttc 6695362  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 240
Target Start/End: Original strand, 45366779 - 45366922
Alignment:
Q  99 atgagtactaggttggtgacctaag-tttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaaccac 196  Q
    ||||||| |||| |||||||||||| |||||||| |||||||||||||  | ||||| ||| ||||| ||| || |||| | ||||||||||| ||| |     
T  45366779 atgagtattaggatggtgacctaagttttaattagtgtttctcttatgccgcggtttagtttggttgttaaaataaaaatcacaaaccgaaccaaactat 45366878  T
Q  197 atggttgagtnnnnnnntgatccgaatacatccgaaccaaatgc 240  Q
     | |||||||       ||| |||||||||||||||||||||||    
T  45366879 gttgttgagtaaaaaaatgacccgaatacatccgaaccaaatgc 45366922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 11219469 - 11219537
Alignment:
Q  172 aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaatgc 240  Q
    |||||||||||||||||| |||||  || ||||||       |||||||||||||||||||||||||||    
T  11219469 aaaaccgcaaaccgaaccaaaccatgtgattgagtaaaaaaatgatccgaatacatccgaaccaaatgc 11219537  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 9741523 - 9741569
Alignment:
Q  10 gagatgatacatgtgggagccttgaagaagaaaagaaaatagactgg 56  Q
    ||||| ||||||||||| |||||||||||| |||||||||| |||||    
T  9741523 gagattatacatgtgggggccttgaagaaggaaagaaaataaactgg 9741569  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 35687998 - 35687916
Alignment:
Q  94 tttctatgagtactaggttggtgacctaagtttaattactgtttctc-ttatgttgtggttttgttgggttgctaacataaaa 175  Q
    |||||||||||||| |||| ||  |||||||||||||| ||||| || |||||||| ||||| ||| |||| |||| ||||||    
T  35687998 tttctatgagtacttggtttgtatcctaagtttaattagtgtttttctttatgttgcggtttggttcggttactaaaataaaa 35687916  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 13325747 - 13325819
Alignment:
Q  124 tttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaacca 195  Q
    |||||||| ||||| |||||| ||| ||||| ||| ||||| ||| || |||||||||||||||||| |||||    
T  13325747 tttaattattgtttttcttatattgcggtttggtttggttgataaaatcaaaaccgcaaaccgaaccaaacca 13325819  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 14005822 - 14005778
Alignment:
Q  13 atgatacatgtgggagccttgaagaagaaaagaaaatagactgga 57  Q
    ||||||| |||| |||| ||||||||| |||||||||||||||||    
T  14005822 atgatacttgtgagagctttgaagaaggaaagaaaatagactgga 14005778  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 20482945 - 20482887
Alignment:
Q  97 ctatgagtactaggttg-gtgacctaagtttaattactgtttctcttatgttgtggttt 154  Q
    ||||||||||||||||| ||||  |||||||||||| |||||||||||| ||| |||||    
T  20482945 ctatgagtactaggttgagtgatataagtttaattagtgtttctcttatattgcggttt 20482887  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 14341550 - 14341592
Alignment:
Q  10 gagatgatacatgtgggagccttgaagaagaaaagaaaataga 52  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||    
T  14341550 gagatgatacatgtgggagccttgaaaaaggaaagaaagtaga 14341592  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 26344671 - 26344569
Alignment:
Q  139 tcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaa 237  Q
    |||||| ||| ||||| ||| ||||| ||| || ||||| |||||||||||| |||||   ||||||||       ||||||||||||||||||||||||    
T  26344671 tcttatattgcggtttggttcggttggtaaaatcaaaactgcaaaccgaaccaaaccatgcggttgagtaaaaaattgatccgaatacatccgaaccaaa 26344572  T
Q  238 tgc 240  Q
    |||    
T  26344571 tgc 26344569  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 26588805 - 26588736
Alignment:
Q  16 atacatgtgggagccttgaagaagaaaagaaaatagact-ggagagaggacatgacaaacttctgaagaa 84  Q
    |||||||  ||||||||||||||||||| ||||||||||   ||||||||||||||  ||||| ||||||    
T  26588805 atacatgcaggagccttgaagaagaaaacaaaatagactaaaagagaggacatgacctacttcagaagaa 26588736  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 33770146 - 33770183
Alignment:
Q  94 tttctatgagtactaggttggtgacctaagtttaatta 131  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  33770146 tttctatgagtactaggtttgtgacctacgtttaatta 33770183  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 50311133 - 50311198
Alignment:
Q  120 taagtttaattactgtttctcttatgttgtggttttgttgggttgctaacat-aaaaccgcaaacc 184  Q
    |||||||||||| ||||||| ||||||||  |||| ||| ||||||||| || |||||||||||||    
T  50311133 taagtttaattagtgtttcttttatgttgcagtttggttcggttgctaaaataaaaaccgcaaacc 50311198  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 25559601 - 25559532
Alignment:
Q  172 aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaatgca 241  Q
    |||||| ||||||||||| ||||| | ||||||||       ||||||||||| ||||||||||||||||    
T  25559601 aaaaccacaaaccgaaccaaaccatacggttgagtaaaaaaatgatccgaatatatccgaaccaaatgca 25559532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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