View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7438_high_4 (Length: 301)
Name: NF7438_high_4
Description: NF7438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7438_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 9712962 - 9713187
Alignment:
| Q |
20 |
acatgcaccatttcctattgacccattgtaattgtgatttgtgacaatcaactgcaagcaaccacaataaaactatgg----gcaagcacactgaatgaa |
115 |
Q |
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| T |
9712962 |
acatgcaccatttcctattgacccattgtaattgtgatttgtgacaatcaactgcaagcaaccacaataaaactatgggcaagcaagcacactgaatgaa |
9713061 |
T |
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| Q |
116 |
tgaaatgtacaattgacactttttgttagttttgttgatagcaattttacttcaatgttacaataacataactgttatttcagattaggtggaccaacaa |
215 |
Q |
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| T |
9713062 |
tgaaatgtacaattgacactttttgttagttttgttgatag-------------------caataacataactgttatttcagattaggtggaccaacaa |
9713142 |
T |
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| Q |
216 |
tctgccgttgaaatctagatcatgtgccacgtgtcatgacagaga |
260 |
Q |
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| T |
9713143 |
tctgccgttgaaatctagatcatgtgccacgtgtcatgacagaga |
9713187 |
T |
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