View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7438_low_2 (Length: 415)

Name: NF7438_low_2
Description: NF7438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7438_low_2
NF7438_low_2
[»] chr3 (25 HSPs)
chr3 (1-397)||(42663808-42664203)
chr3 (11-218)||(5125395-5125602)
chr3 (11-220)||(11019653-11019862)
chr3 (24-213)||(29923035-29923224)
chr3 (24-213)||(29972188-29972377)
chr3 (11-218)||(54607827-54608028)
chr3 (58-215)||(48154355-48154512)
chr3 (51-219)||(36689668-36689832)
chr3 (58-218)||(32180416-32180576)
chr3 (91-216)||(31706487-31706612)
chr3 (58-187)||(19606610-19606739)
chr3 (58-179)||(26000755-26000876)
chr3 (58-218)||(40640295-40640456)
chr3 (24-175)||(47871177-47871328)
chr3 (37-179)||(4556950-4557092)
chr3 (60-179)||(45879191-45879310)
chr3 (58-219)||(49359292-49359453)
chr3 (126-189)||(7758129-7758192)
chr3 (41-169)||(12121167-12121295)
chr3 (125-191)||(7568418-7568484)
chr3 (58-179)||(38392332-38392453)
chr3 (26-189)||(435201-435362)
chr3 (74-218)||(47930330-47930476)
chr3 (60-174)||(40744148-40744262)
chr3 (168-213)||(18271873-18271918)
[»] chr1 (17 HSPs)
chr1 (11-215)||(28012877-28013083)
chr1 (11-216)||(422158-422364)
chr1 (58-220)||(47554978-47555140)
chr1 (58-225)||(16135546-16135713)
chr1 (11-119)||(7842344-7842453)
chr1 (58-187)||(15964323-15964451)
chr1 (141-221)||(7843091-7843171)
chr1 (77-216)||(5500596-5500734)
chr1 (58-193)||(13876609-13876744)
chr1 (151-219)||(43579563-43579631)
chr1 (58-191)||(3120554-3120687)
chr1 (58-174)||(25943421-25943537)
chr1 (73-196)||(3120161-3120284)
chr1 (155-213)||(4146690-4146748)
chr1 (172-235)||(3535297-3535360)
chr1 (73-180)||(16127755-16127862)
chr1 (163-214)||(42663232-42663283)
[»] chr7 (14 HSPs)
chr7 (11-219)||(8759412-8759620)
chr7 (58-215)||(25470644-25470801)
chr7 (58-210)||(23402045-23402197)
chr7 (58-206)||(49002447-49002595)
chr7 (58-219)||(4902543-4902704)
chr7 (58-188)||(37853990-37854121)
chr7 (58-179)||(7743153-7743274)
chr7 (60-164)||(5781740-5781844)
chr7 (58-220)||(4618418-4618580)
chr7 (58-215)||(10674925-10675084)
chr7 (273-340)||(24767596-24767663)
chr7 (58-222)||(22954974-22955137)
chr7 (58-113)||(40382112-40382167)
chr7 (74-143)||(8133299-8133368)
[»] chr5 (21 HSPs)
chr5 (11-212)||(26412005-26412207)
chr5 (58-221)||(8762858-8763021)
chr5 (59-212)||(12080405-12080558)
chr5 (58-215)||(13888330-13888487)
chr5 (77-220)||(3014683-3014825)
chr5 (24-191)||(33848039-33848206)
chr5 (24-186)||(33752405-33752567)
chr5 (23-196)||(10053786-10053953)
chr5 (44-186)||(13381110-13381251)
chr5 (74-221)||(25654588-25654733)
chr5 (58-219)||(22616716-22616874)
chr5 (58-219)||(10237636-10237796)
chr5 (63-223)||(31878612-31878772)
chr5 (58-170)||(33163738-33163849)
chr5 (77-216)||(36055542-36055681)
chr5 (73-177)||(12164016-12164120)
chr5 (58-177)||(29766508-29766627)
chr5 (125-215)||(21321040-21321130)
chr5 (77-219)||(27579268-27579410)
chr5 (61-173)||(41417289-41417401)
chr5 (172-221)||(23954550-23954599)
[»] chr8 (12 HSPs)
chr8 (24-221)||(1872575-1872771)
chr8 (58-191)||(34685998-34686131)
chr8 (60-219)||(4108579-4108738)
chr8 (60-191)||(23176479-23176610)
chr8 (58-191)||(3038628-3038761)
chr8 (60-213)||(28220703-28220856)
chr8 (151-224)||(30650894-30650967)
chr8 (58-211)||(18756339-18756492)
chr8 (58-189)||(7290942-7291073)
chr8 (151-189)||(3859361-3859399)
chr8 (172-221)||(5299710-5299759)
chr8 (172-220)||(37970284-37970332)
[»] chr4 (19 HSPs)
chr4 (24-220)||(14246381-14246577)
chr4 (58-215)||(5914938-5915095)
chr4 (1-179)||(5813411-5813587)
chr4 (60-187)||(17612559-17612686)
chr4 (58-187)||(2266553-2266681)
chr4 (58-220)||(9743813-9743972)
chr4 (108-207)||(22721927-22722026)
chr4 (58-179)||(2570701-2570822)
chr4 (37-113)||(28292430-28292506)
chr4 (143-215)||(37795138-37795210)
chr4 (11-85)||(22722026-22722101)
chr4 (28-202)||(47237449-47237623)
chr4 (58-167)||(49878898-49879006)
chr4 (151-215)||(2708206-2708270)
chr4 (61-114)||(54995015-54995068)
chr4 (132-191)||(9409522-9409580)
chr4 (172-221)||(36493473-36493522)
chr4 (168-221)||(47073059-47073112)
chr4 (151-215)||(28292363-28292427)
[»] scaffold0312 (1 HSPs)
scaffold0312 (11-216)||(8208-8414)
[»] chr2 (22 HSPs)
chr2 (24-221)||(6357010-6357207)
chr2 (11-222)||(59348-59560)
chr2 (58-225)||(7565512-7565681)
chr2 (58-223)||(32652622-32652787)
chr2 (11-214)||(43445222-43445434)
chr2 (58-217)||(19093677-19093836)
chr2 (58-223)||(18514392-18514557)
chr2 (58-191)||(19073575-19073708)
chr2 (58-217)||(6177997-6178156)
chr2 (58-181)||(18059064-18059187)
chr2 (63-215)||(41644101-41644253)
chr2 (60-223)||(41713386-41713550)
chr2 (60-190)||(34441573-34441703)
chr2 (58-109)||(40912464-40912515)
chr2 (13-174)||(45411862-45412024)
chr2 (74-179)||(18779111-18779216)
chr2 (58-187)||(39788307-39788435)
chr2 (154-218)||(17244773-17244837)
chr2 (58-215)||(18947278-18947435)
chr2 (59-114)||(15651072-15651127)
chr2 (13-174)||(27355145-27355307)
chr2 (58-114)||(17244839-17244895)
[»] chr6 (12 HSPs)
chr6 (58-224)||(25441710-25441876)
chr6 (58-215)||(4487724-4487881)
chr6 (58-221)||(18306543-18306706)
chr6 (60-215)||(11083826-11083978)
chr6 (58-191)||(4104239-4104372)
chr6 (58-221)||(6613655-6613818)
chr6 (1-103)||(26819694-26819798)
chr6 (124-191)||(30341505-30341572)
chr6 (14-71)||(18309158-18309215)
chr6 (189-228)||(26819644-26819684)
chr6 (75-187)||(34994071-34994183)
chr6 (133-218)||(19632047-19632132)
[»] scaffold0200 (1 HSPs)
scaffold0200 (58-179)||(24522-24643)
[»] scaffold0262 (1 HSPs)
scaffold0262 (24-113)||(11443-11532)
[»] scaffold0001 (1 HSPs)
scaffold0001 (37-189)||(65972-66125)
[»] scaffold0003 (1 HSPs)
scaffold0003 (13-111)||(107904-108003)


Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 42664203 - 42663808
Alignment:
Q  1 atgaataacaaaaaatgattttatttaaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  42664203 atgaataacaaaaaatgattttatttaaatacaatcagttaataaatcaaaagtaaataat-ttttgtacgaggactgatttgtaataaagtaaaattta 42664105  T
Q  101 gtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttga 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42664104 gtcttacagtggtttatcacaaagacactagctgacatgacatcaacaactatactattgactaaataaaataactttttctaaaaagtcattttcttga 42664005  T
Q  201 ctacaccatagaagcccccttaattaaaatgtaatatataccatcacataaattatagaatattaaaataaatgtgggttttttatactacacgttgcgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  42664004 ctacaccatagaagcccccttaattaaaatgtaatatataccatcacataaattatagaatattaaaataaatgtggattttttatactacacgttacgg 42663905  T
Q  301 aatacttcctcgtagacaacattgaaggtcatttcagtgtctacatgttactcaggtttgagatttttgtccaccaagaattttgcatcatattgat 397  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  42663904 aatacttccttgtagacaacattggaggtcatttcagtgtctacatgttactcaggtttgagatttttgtccacctagagttttgcatcatattgat 42663808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 5125395 - 5125602
Alignment:
Q  11 aaaaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacag 109  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||| | |||||||||||||||||  || | |||||||||||||    
T  5125395 aaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtaagaggactgatttgtaataagatata-tttagtcttacag 5125493  T
Q  110 tggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccat 209  Q
    ||||| |||||||||||||||||||||||| ||| ||||| |||  |||||  |||| |||||||||||||| |||||||||||||||||||||||||||    
T  5125494 tggtccatcacaaagacactagctgacatggcattaacaattatgttattggttaaataaaataactttttcaaaaaagtcattttcttgactacaccat 5125593  T
Q  210 agaagcccc 218  Q
    |||| ||||    
T  5125594 agaaacccc 5125602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 11019653 - 11019862
Alignment:
Q  11 aaaaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacag 109  Q
    |||||||| ||||||| ||||  ||| |||||||||||||||||||| ||||||||| |||| |||||||||||||||||  ||||||||||||||| ||    
T  11019653 aaaaatgaatttattttaaattaaataagttaataaatcaaaagtaattaatattttatacgaggactgatttgtaataagataaaatttagtcttagag 11019752  T
Q  110 tggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccat 209  Q
    ||||| |||||||||||||||||| |||| |||| |||||  || |||||| ||||| ||||| |||||||| ||||| ||||||| |||||||||||||    
T  11019753 tggtccatcacaaagacactagctaacattacat-aacaatcatgctattggctaaataaaatgactttttcaaaaaaatcatttttttgactacaccat 11019851  T
Q  210 agaagccccct 220  Q
    |||||||||||    
T  11019852 agaagccccct 11019862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 29923224 - 29923035
Alignment:
Q  24 tttaaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaa 123  Q
    |||||||| ||| ||||||||||||||| || | |||||||||||||  | ||| |||||||||||||||||||||||| ||| ||||||| ||||||||    
T  29923224 tttaaataaaataagttaataaatcaaaggttattaatattttgtacaagaacttatttgtaataaagtaaaatttagttttatagtggtccatcacaaa 29923125  T
Q  124 gacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaa 213  Q
    |||   |||||||||| |||||| ||||||||||||   |||| ||||| |||||||  |||||||||||||||||||||||||||||||    
T  29923124 gacgtcagctgacatggcatcaagaactatactattagttaaataaaatgactttttaaaaaaagtcattttcttgactacaccatagaa 29923035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 29972377 - 29972188
Alignment:
Q  24 tttaaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaa 123  Q
    |||||||| ||| ||||||||||||||| || | |||||||||||||  | ||| |||||||||||||||||||||||| ||| ||||||| ||||||||    
T  29972377 tttaaataaaataagttaataaatcaaaggttattaatattttgtacaagaacttatttgtaataaagtaaaatttagttttatagtggtccatcacaaa 29972278  T
Q  124 gacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaa 213  Q
    |||   |||||||||| |||||| ||||||||||||   |||| ||||| |||||||  |||||||||||||||||||||||||||||||    
T  29972277 gacgtcagctgacatggcatcaagaactatactattagttaaataaaatgactttttaaaaaaagtcattttcttgactacaccatagaa 29972188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 54607827 - 54608028
Alignment:
Q  11 aaaaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacag 109  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||| |  |||||||||||||| |||  | ||||||||||||||    
T  54607827 aaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtaagaagactgatttgtaat-aagatatatttagtcttacag 54607925  T
Q  110 tggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccat 209  Q
    ||||| |||||||||||||      ||||| ||||||||| |||  ||||| ||||| ||||| |||||||| |||||||||||||||| ||||||||||    
T  54607926 tggtccatcacaaagacac------acatggcatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttaactacaccat 54608019  T
Q  210 agaagcccc 218  Q
    |||||||||    
T  54608020 agaagcccc 54608028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 48154512 - 48154355
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||||||||| |||    
T  48154512 taatgttttgtatgaggactgatttgtaataaagtaaaatttagtgttacagtggtccatcacaaagacactagctgacatggcatgaacaactatgcta 48154413  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagc 215  Q
    |||  |||||||||| | |||||  ||||||||||||| || ||| ||||||||||||    
T  48154412 ttggttaaacaaaatgatttttttaaaaaagtcatttttttaactgcaccatagaagc 48154355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 51 - 219
Target Start/End: Original strand, 36689668 - 36689832
Alignment:
Q  51 aagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaac 150  Q
    |||||| |||||||||||| | ||||| ||||||||||||||||| |||||| |||| |||||| ||||  |||||||||||||||||||||||||||||    
T  36689668 aagtaattaatattttgtatgaggacttatttgtaataaagtaaagtttagttttacggtggtccatcaacaagacactagctgacatgacatcaacaac 36689767  T
Q  151 tatactattgactaaacaaaataactttttc-taaaaagtcattttcttgactacaccatagaagccccc 219  Q
    |||  |||||  |     |||| ||||||||  ||||||||||||||||||| |||||||||||||||||    
T  36689768 tatgttattggtt-----aaatgactttttcaaaaaaagtcattttcttgacaacaccatagaagccccc 36689832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 32180576 - 32180416
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | ||||||||||||||||| ||||| |||||| ||| ||||||| | ||  | ||||||||| |||||||||||| ||  |||||||    
T  32180576 taatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggtccaccagcaggacactagccgacatgacatcagcagttatacta 32180477  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagcccc 218  Q
    ||| |||||||||||||||||| | || |||||| |||  |||||||| | ||||||||||    
T  32180476 ttggctaaacaaaataacttttccaaagaagtcaattttctgactacatcgtagaagcccc 32180416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 31706612 - 31706487
Alignment:
Q  91 gtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtc 190  Q
    ||||| |||||||||| ||||||| ||||  | |||||||| | |||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||    
T  31706612 gtaaagtttagtcttagagtggtccatcaacaggacactagttaacatgacatcaaaaattatactattgattaaacaaaataactttttcaaaaaagtc 31706513  T
Q  191 attttcttgactacaccatagaagcc 216  Q
    | ||| |||||| |||| | ||||||    
T  31706512 agttttttgactgcaccgttgaagcc 31706487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 19606739 - 19606610
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | ||||||||||||||||| ||||| |||||| ||| ||||||| |  |  | |||||||||||||||||||||  |    ||||||    
T  19606739 taatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggtccacgagcaggacactagctgacatgacatcggcggtaatacta 19606640  T
Q  158 ttgactaaacaaaataactttttctaaaaa 187  Q
    |||||||||||||||||||||||| |||||    
T  19606639 ttgactaaacaaaataactttttcaaaaaa 19606610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 26000755 - 26000876
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | | ||||||||||||||||||||| |||||| ||| ||||||||||||  | || | |||||||||||| ||| |||  |||||||    
T  26000755 taatattttgtatgagtactgatttgtaataaagtaaagtttagttttagagtggtctatcagtaggatagtagctgacatgatatcgacagttatacta 26000854  T
Q  158 ttgactaaacaaaataactttt 179  Q
    |||| | |||||||||||||||    
T  26000855 ttgattcaacaaaataactttt 26000876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 40640456 - 40640295
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | |||||||||||||||||| |||| |||||| ||| |||| |||| ||  | | ||| || |||||||||||   ||  |||||||    
T  40640456 taatattttgtatgaggactgatttgtaataaaataaagtttagttttagagtgatctaccagcagggcaccagttgacatgacataggcacttatacta 40640357  T
Q  158 ttgactaaacaaaataactttttc-taaaaagtcattttcttgactacaccatagaagcccc 218  Q
    ||||||||||||||||||||||||  ||||||||| ||| ||||||  ||| ||||||||||    
T  40640356 ttgactaaacaaaataactttttcaaaaaaagtcaattttttgactgaaccgtagaagcccc 40640295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 47871177 - 47871328
Alignment:
Q  24 tttaaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaa 123  Q
    |||||||| ||| |||||||||||||||||||| ||||||||| || | |||||||||||||| |  ||||| |||| ||||| |||| ||   ||  |     
T  47871177 tttaaataaaataagttaataaatcaaaagtaattaatattttatatgaggactgatttgtaacattgtaaagtttaatcttagagtgatccggcagcag 47871276  T
Q  124 gacactagctgacatgacatcaacaactatactattgactaaacaaaataac 175  Q
    |||||||| ||||||||||||||||  |||| ||||| ||||| ||||||||    
T  47871277 gacactagttgacatgacatcaacagttatattattggctaaataaaataac 47871328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 179
Target Start/End: Original strand, 4556950 - 4557092
Alignment:
Q  37 agttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgac 136  Q
    |||||||||||||||||||| || | |||| ||   ||||||||||||||||| | ||| ||||| |||||| ||||| ||||  |  | |||| |||||    
T  4556950 agttaataaatcaaaagtaattattgttttttataaggactgatttgtaataaggaaaagtttagacttacaatggtccatcaacagtatactaactgac 4557049  T
Q  137 atgacatcaacaactatactattgactaaacaaaataactttt 179  Q
    ||||||||||||| ||| |||| | | ||||||||||||||||    
T  4557050 atgacatcaacaattatcctataggcaaaacaaaataactttt 4557092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 45879310 - 45879191
Alignment:
Q  60 atattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaacta---tact 156  Q
    |||||||||| | ||||||||||||||||| ||||| |||||  ||| |||||||   ||| | |||||||||||||||||||||| ||| ||   ||||    
T  45879310 atattttgtatgaggactgatttgtaataaggtaaagtttagctttaaagtggtc---caccaggacactagctgacatgacatcagcaattatattact 45879214  T
Q  157 attgactaaacaaaataactttt 179  Q
    |||| ||||||||||||||||||    
T  45879213 attggctaaacaaaataactttt 45879191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 219
Target Start/End: Complemental strand, 49359453 - 49359292
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | |||||||||| |||||| ||||| |||||| ||| | ||||||| ||| | |||||||||||||||||||||      |||||||    
T  49359453 taatattttgtatgaggactgatttataataaggtaaagtttagt-ttagattggtctaccactaggacactagctgacatgacatcggttgttatacta 49359355  T
Q  158 ttgactaaacaaaataac-tttttctaaaaagtcattttcttgactacaccatagaagccccc 219  Q
     || |||||||||||||| |||||| ||||||||| |||  | ||| |||| |||||||||||    
T  49359354 atggctaaacaaaataacttttttcaaaaaagtcaattttctaactgcaccgtagaagccccc 49359292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 7758192 - 7758129
Alignment:
Q  126 cactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagt 189  Q
    ||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||| |||||||    
T  7758192 cactagctgacatgatatcggcaattatactattgactaaacaaaataactttttcaaaaaagt 7758129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 12121295 - 12121167
Alignment:
Q  41 aataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatga 140  Q
    |||||||||||||||| ||||||||||||   ||| | ||||||||||| ||||| |||||||||| ||||||  | ||  |  ||| |||||||||||     
T  12121295 aataaatcaaaagtaattaatattttgtataaggagttatttgtaataaggtaaagtttagtcttatagtggttcaccatcagaacattagctgacatgg 12121196  T
Q  141 catcaacaactatactattgactaaacaa 169  Q
    ||||||||  |||| ||||||| ||||||    
T  12121195 catcaacagatatattattgacaaaacaa 12121167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 7568484 - 7568418
Alignment:
Q  125 acactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtca 191  Q
    |||||||||||||| | ||| |||  ||||||||||||||||||||||||||||||| |||| ||||    
T  7568484 acactagctgacataaaatcgacagttatactattgactaaacaaaataactttttcaaaaatgtca 7568418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 38392453 - 38392332
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| |  |||||||||||||||| |||||||||||| ||| |  |||  | ||  | |||||||||||| |||| |||| ||  |||| ||    
T  38392453 taatattttgtaagatgactgatttgtaataatgtaaaatttagttttagaacggttcaccaacatgacactagctgatatgatatcagcagttatatta 38392354  T
Q  158 ttgactaaacaaaataactttt 179  Q
    ||| ||||||||||||||||||    
T  38392353 ttggctaaacaaaataactttt 38392332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 435201 - 435362
Alignment:
Q  26 taaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaaga 125  Q
    |||||| ||| ||||||||||||||| |||| |||  |||| |||| ||||| ||||||||||| | ||| ||||| |||||| | ||| |  |  |  |    
T  435201 taaataaaataagttaataaatcaaa-gtaattaaagttttctacgaggactaatttgtaataaggaaaagtttagacttacaattgtccacgagcagta 435299  T
Q  126 cactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagt 189  Q
    || || || ||||| |||||||| |||| |||||| |||||||||||||||||| | |||||||    
T  435300 cattaact-acatggcatcaacagctatcctattggctaaacaaaataacttttccaaaaaagt 435362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 47930476 - 47930330
Alignment:
Q  74 gactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaata 173  Q
    ||||||||||||||||||||||  ||||| ||| ||||||| |  |  | ||||||| |||| ||||||||  ||  |||||||||  ||||||||||||    
T  47930476 gactgatttgtaataaagtaaagcttagttttagagtggtccactaacaggacactaactgatatgacatcggcagttatactattagctaaacaaaata 47930377  T
Q  174 a--ctttttctaaaaagtcattttcttgactacaccatagaagcccc 218  Q
    |   |||||| ||||||||| |||  ||||| |||| || |||||||    
T  47930376 attttttttcaaaaaagtcaattttctgacttcaccgtaaaagcccc 47930330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 40744262 - 40744148
Alignment:
Q  60 atattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactatt 159  Q
    |||||||||| | ||| ||||||||||||| ||||  |||||||||| ||||||||| ||  | || |||| ||  |||| |||||||   ||| |||||    
T  40744262 atattttgtatgaggattgatttgtaataaggtaatgtttagtcttagagtggtctaccagtaggatactaactaccatggcatcaaccgttatgctatt 40744163  T
Q  160 gactaaacaaaataa 174  Q
    | |||||||||||||    
T  40744162 ggctaaacaaaataa 40744148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 18271918 - 18271873
Alignment:
Q  168 aaaataactttttctaaaaagtcattttcttgactacaccatagaa 213  Q
    |||||||||||||  ||||||||| |||||||||| ||||||||||    
T  18271918 aaaataacttttttaaaaaagtcaatttcttgactgcaccatagaa 18271873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 28012877 - 28013083
Alignment:
Q  11 aaaaatgattttattt-aaatacaatcagttaataaatcaaaa-gtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttaca 108  Q
    |||||||||||||||| ||||| ||| |||||||||||||||| |||| ||||| ||| |||| ||||||||||||||||| ||||| |||| |||| |     
T  28012877 aaaaatgattttattttaaataaaataagttaataaatcaaaaagtaattaatagtttttacgaggactgatttgtaataaggtaaagtttactcttgcg 28012976  T
Q  109 gtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacacca 208  Q
     ||||||||||  |||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||| |||||| |||||||||||||||||||    
T  28012977 atggtctatcagcaagacactagctgacatgacatcaacaattatgctattggctaaccaaaataactttttcaaaaaagacattttcttgactacacca 28013076  T
Q  209 tagaagc 215  Q
    |||||||    
T  28013077 tagaagc 28013083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 422158 - 422364
Alignment:
Q  11 aaaaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacag 109  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||| | ||||| | ||||||||||||||| ||||||| || ||    
T  422158 aaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtatgaggactaagttgtaataaagtaaagtttagtcgtagag 422257  T
Q  110 tggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccat 209  Q
    ||||| ||||  |||||| |||||||||||| |||||| |||||  |||||  |||| ||||| |||||||| ||||||||||||||||||| |||||||    
T  422258 tggtccatcaacaagacattagctgacatgatatcaactactatgttattggttaaataaaatgactttttcaaaaaagtcattttcttgacaacaccat 422357  T
Q  210 agaagcc 216  Q
    |||||||    
T  422358 agaagcc 422364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 47554978 - 47555140
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| |  |||||||||||||||| ||||| |||| ||||| |||||||||  |  | |||||||| ||||||| | ||||||  |||||||    
T  47554978 taatattttgtatgatgactgatttgtaataaggtaaagtttactcttagagtggtctactagcaggacactagttgacatggcctcaacagttatacta 47555077  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccct 220  Q
    |||  ||||||||||||||||||| ||||||||| |||| | ||| |||| ||||||||||||    
T  47555078 ttggttaaacaaaataactttttcaaaaaagtcagtttcctaactgcaccgtagaagccccct 47555140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 225
Target Start/End: Original strand, 16135546 - 16135713
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | | ||||||||||||||  ||||| |||||| ||| ||||||| | ||  | |||||||| |||||||||||| |||  |||||||    
T  16135546 taatattttgtatgagaactgatttgtaatagggtaaagtttagttttagagtggtccaccagtatgacactagttgacatgacatcgacagttatacta 16135645  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagcccccttaatt 225  Q
    ||  |||||||||||||||||||| ||||||  | |||  ||||| |||| |||||||||||||||||    
T  16135646 ttagctaaacaaaataactttttcaaaaaagcaaattttctgactgcaccctagaagcccccttaatt 16135713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 7842344 - 7842453
Alignment:
Q  11 aaaaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacag 109  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||  |||||||| |||| ||| |||||||||||||  |||| |||| ||||||||    
T  7842344 aaaaatgattttattttaaataaaataagttaataaatcaaaagtaataaatattttttacgaggattgatttgtaataagataaagtttattcttacag 7842443  T
Q  110 tggtctatca 119  Q
    ||||||||||    
T  7842444 tggtctatca 7842453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 15964323 - 15964451
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    ||||||||| || | ||||||||||||||||| |||||||||||| ||| ||||||  || |  | ||||||||||||||||||||| |||  |||||||    
T  15964323 taatattttatatgaggactgatttgtaataaggtaaaatttagttttagagtggtacattagtaggacactagctgacatgacatcgacagttatacta 15964422  T
Q  158 ttgactaaacaaaataactttttctaaaaa 187  Q
    ||| ||||||||||||| ||||||||||||    
T  15964423 ttggctaaacaaaataa-tttttctaaaaa 15964451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 7843091 - 7843171
Alignment:
Q  141 catcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccctt 221  Q
    ||||||||| ||| |||||| | || ||||||||||||||  ||||||||||||||||||||||||||||||||| |||||    
T  7843091 catcaacaattatgctattggccaaccaaaataactttttaaaaaaagtcattttcttgactacaccatagaagcaccctt 7843171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 5500596 - 5500734
Alignment:
Q  77 tgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataact 176  Q
    |||||| |||||| |||||||||||| ||| |||| || |  ||| | |||||||||||||||||||| | |  |||||||||  |||||||||||||||    
T  5500596 tgatttataataaggtaaaatttagttttagagtgatccacgacaga-acactagctgacatgacatcgatagttatactattagctaaacaaaataact 5500694  T
Q  177 ttttctaaaaagtcattttcttgactacaccatagaagcc 216  Q
    ||||| ||||||| | ||| || ||| |||| ||||||||    
T  5500695 ttttcaaaaaagttagttttttaactgcaccgtagaagcc 5500734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 193
Target Start/End: Complemental strand, 13876744 - 13876609
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | | || |||||||||||| ||||| |||||| ||| ||||||| | ||  | ||||||||||||||||||||| |||  |||||      
T  13876744 taatattttgtatgagtaccgatttgtaataaggtaaagtttagttttagagtggtccaccagcatgacactagctgacatgacatcgacagttataccg 13876645  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcatt 193  Q
    ||  ||||||||||||||||||   |||||||||||    
T  13876644 ttcgctaaacaaaataacttttgtaaaaaagtcatt 13876609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 43579563 - 43579631
Alignment:
Q  151 tatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccc 219  Q
    ||||||||||||||||||||||||| |||| |||||||||| |||  ||||| |||||||||| |||||    
T  43579563 tatactattgactaaacaaaataacattttttaaaaagtcagtttactgactgcaccatagaaaccccc 43579631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 3120687 - 3120554
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||| ||||| | ||||||||||||||||| ||||| |||| ||||| ||||||| | ||  | |||||||  ||||||  ||||||||  |||| ||    
T  3120687 taatatattgtatgaggactgatttgtaataaggtaaagtttaatcttagagtggtccaccaagaggacactaattgacatagcatcaacagttatatta 3120588  T
Q  158 ttgactaaacaaaataactttttctaaaaagtca 191  Q
    |||  |||||||||||| |||||  |||||||||    
T  3120587 ttggttaaacaaaataatttttttaaaaaagtca 3120554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 25943421 - 25943537
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    ||||||||||||||  ||||||||||||||||  |||||||||||  || ||||||| | ||  |  |  |||| |||||||| ||| |||| |||||||    
T  25943421 taatattttgtacgatgactgatttgtaataagataaaatttagtagtagagtggtccaccaacagaatgctagttgacatgagatcgacaattatacta 25943520  T
Q  158 ttgactaaacaaaataa 174  Q
    ||| |||||||||||||    
T  25943521 ttggctaaacaaaataa 25943537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 196
Target Start/End: Complemental strand, 3120284 - 3120161
Alignment:
Q  73 ggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaat 172  Q
    ||||||||||||||||||||||| || ||||||| | ||||| | ||  | |||||||| |||||||  |||||||  |||| ||||   ||||||||||    
T  3120284 ggactgatttgtaataaagtaaagttaagtcttagaatggtccaccaacatgacactagttgacatggtatcaacagttatattatttgataaacaaaat 3120185  T
Q  173 aactttttctaaaaagtcattttc 196  Q
    || |||||| ||||| ||| ||||    
T  3120184 aattttttcaaaaaaatcaatttc 3120161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 4146748 - 4146690
Alignment:
Q  155 ctattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaa 213  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||| ||| |||| |||||    
T  4146748 ctattgattaaacaaaataactttttcaaaaaagtcagtttcttaacttcaccgtagaa 4146690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 3535297 - 3535360
Alignment:
Q  172 taactttttctaaaaagtcattttcttgactacaccatagaagcccccttaattaaaatgtaat 235  Q
    |||||||||  ||||| ||| |||| |||||||||| ||||||| ||||| |||||||||||||    
T  3535297 taactttttaaaaaaaatcagtttcatgactacaccgtagaagctccctttattaaaatgtaat 3535360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 16127755 - 16127862
Alignment:
Q  73 ggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaat 172  Q
    |||||| |||||||||| ||||| |||||| ||| ||| ||| | |   | ||||||| ||||||| ||||| |||   ||||||||||||||| |||||    
T  16127755 ggactggtttgtaataaggtaaagtttagttttaaagtagtccacctgcaggacactaactgacataacatcgacagtaatactattgactaaataaaat 16127854  T
Q  173 aacttttt 180  Q
    ||||||||    
T  16127855 aacttttt 16127862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 42663283 - 42663232
Alignment:
Q  163 taaacaaaataactttttctaaaaagtcattttcttgactacaccatagaag 214  Q
    |||| |||||||||||||| ||||||||| |||| ||||| |||||||||||    
T  42663283 taaataaaataactttttcaaaaaagtcaatttcgtgactgcaccatagaag 42663232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 8759412 - 8759620
Alignment:
Q  11 aaaaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacag 109  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||| | |||| |||||||| |||  || | |||| ||||||||    
T  8759412 aaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtaagaggaccgatttgtactaagatata-tttaatcttacag 8759510  T
Q  110 tggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccat 209  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||  ||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||||    
T  8759511 tggtccatcaaaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttggctacaccat 8759610  T
Q  210 agaagccccc 219  Q
    ||||||||||    
T  8759611 agaagccccc 8759620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 58 - 215
Target Start/End: Original strand, 25470644 - 25470801
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||||||| ||| ||||||||| |||    
T  25470644 taatattttgtacgaggactgatttgtaataaagtaaaatttagtgttacggtggtccatcacaaagacactcgctgacatggcatgaacaactatgcta 25470743  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagc 215  Q
    |||  |||||||||| |||||||  ||||||||||||| |||||| ||||||||||||    
T  25470744 ttggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaagc 25470801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 210
Target Start/End: Complemental strand, 23402197 - 23402045
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    ||||||||||||||  |||||||||||||||   |||| |||||| ||| |||||||   ||  | ||||||||||||||| |||||  ||  |||||||    
T  23402197 taatattttgtacgatgactgatttgtaataggataaagtttagttttagagtggtcccccaacatgacactagctgacataacatcggcagttatacta 23402098  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccata 210  Q
    ||| |||||||||||||||||||  ||||||||| ||| |||||| |||||||    
T  23402097 ttggctaaacaaaataacttttttaaaaaagtcagttttttgactgcaccata 23402045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 206
Target Start/End: Original strand, 49002447 - 49002595
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | ||||||||||||||| | ||||| |||||| ||| ||||||| | ||  | |||| ||||||  |||||||| |||| |||||||    
T  49002447 taatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagcaggacattagctgctatgacatcgacaattatacta 49002546  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacac 206  Q
    |||| |||| |||||||||||||| ||||| ||| |||  |||||||||    
T  49002547 ttgattaaataaaataactttttcaaaaaaatcagttttctgactacac 49002595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 219
Target Start/End: Original strand, 4902543 - 4902704
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | | ||| ||||||||||| ||||| |||||| ||| |||||| ||     | |||| || || |||||| |||  ||  |||||||    
T  4902543 taatattttgtatgagtactaatttgtaataaggtaaagtttagttttagagtggtttactggcaggacaataactaacatgatatcggcagttatacta 4902642  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccc 219  Q
    |||||||||||||||||||||||| ||||||||| |||  ||||| ||||||||||||||||    
T  4902643 ttgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccatagaagccccc 4902704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 37854121 - 37853990
Alignment:
Q  58 taatattttgtacggggactga-tttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatact 156  Q
    |||||||||||| | ||||||| |||| ||||||||||| |||| | ||| ||||||| | ||  ||||||||||||||| ||||| | ||   ||||||    
T  37854121 taatattttgtatgaggactgaatttggaataaagtaaagtttaattttagagtggtccaccaacaagacactagctgacgtgacacctacggttatact 37854022  T
Q  157 attgactaaacaaaataactttttctaaaaag 188  Q
    ||||||||||||||||||||||| | ||||||    
T  37854021 attgactaaacaaaataacttttccaaaaaag 37853990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 7743153 - 7743274
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    ||||||||| || | || ||| |||||||||| ||||| |||||| ||| ||||||| ||||  |  ||| |||| ||||||||||| |||  |||||||    
T  7743153 taatattttatatgagggctgctttgtaataaggtaaagtttagttttagagtggtccatcaacattacattagccgacatgacatcgacagttatacta 7743252  T
Q  158 ttgactaaacaaaataactttt 179  Q
    ||||||||||||||||||||||    
T  7743253 ttgactaaacaaaataactttt 7743274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 5781740 - 5781844
Alignment:
Q  60 atattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactatt 159  Q
    |||||||||| |  ||||||||||||||||||||||| ||||| ||| ||||||  | ||  | ||||||||||||||||| |||  ||| |||||||||    
T  5781740 atattttgtatgatgactgatttgtaataaagtaaaacttagttttaaagtggtgcaccaacatgacactagctgacatgatatcggcaattatactatt 5781839  T
Q  160 gacta 164  Q
    |||||    
T  5781840 gacta 5781844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 4618580 - 4618418
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| |  |||||||||||| |||  |||| |||||| ||| ||||||| | ||  |  ||| ||||| |||||||||| |||  ||||| |    
T  4618580 taatattttgtatgatgactgatttgtagtaagataaagtttagttttagagtggtccaccagcagaacattagctcacatgacatcgacagttatacca 4618481  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccct 220  Q
    |||  |||||||||||| |||||| ||||||||| |||  | | | |||||||||||||||||    
T  4618480 ttggttaaacaaaataagtttttcaaaaaagtcaattttctaatttcaccatagaagccccct 4618418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 10675084 - 10674925
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagct--gacatgacatcaacaactatac 155  Q
    |||||||||||| | ||||| ||||||||||||||||| |||||||||| |||| || |  |  |  ||||||| |  |||||| ||| ||||  |||||    
T  10675084 taatattttgtatgaggactaatttgtaataaagtaaagtttagtcttagagtgatccacaagcagaacactagttgagacatggcattaacagttatac 10674985  T
Q  156 tattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagc 215  Q
    |||||| |||||||||||| |||||  ||||||| | |||| ||| | |||| |||||||    
T  10674984 tattgaataaacaaaataatttttttaaaaaagttagtttcctgattgcaccgtagaagc 10674925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 24767663 - 24767596
Alignment:
Q  273 tgtgggttttttatactacacgttgcggaatacttcctcgtagacaacattgaaggtcatttcagtgt 340  Q
    |||||||||||||| ||||||||| || ||||||||||| ||||| || ||| | |||||||||||||    
T  24767663 tgtgggttttttatgctacacgttacgaaatacttcctcatagacgacgttggatgtcatttcagtgt 24767596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 22955137 - 22954974
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | | ||||||||||||||| ||||| |||||| ||| ||||||| | ||  | |||| ||||  |||||||| ||  |  |||||||    
T  22955137 taatattttgtatgagaactgatttgtaataaggtaaagtttagttttagagtggtccaccagcaggacaatagc-aacatgacagcagtagttatacta 22955039  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccctta 222  Q
    | | |||||||||||||||||||  ||||||| | |||  | ||| |||| || |||||||||||    
T  22955038 taggctaaacaaaataacttttttaaaaaagttaattttctaactgcaccgtacaagccccctta 22954974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 40382112 - 40382167
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggt 113  Q
    |||||||||||| | ||||||||||||||||| ||||| |||||| ||| ||||||    
T  40382112 taatattttgtatgcggactgatttgtaataaggtaaagtttagttttagagtggt 40382167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 8133368 - 8133299
Alignment:
Q  74 gactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacat 143  Q
    |||||||||||||||| ||||| |||||| ||| ||||||  | ||  ||||||| ||||||||||||||    
T  8133368 gactgatttgtaataaggtaaagtttagttttagagtggttcaccagcaagacaccagctgacatgacat 8133299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 26412005 - 26412207
Alignment:
Q  11 aaaaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacag 109  Q
    |||||||| ||||||| ||||| ||| |||||||||||||||||||| ||||||||| |||| ||||||||||| |||||  || ||||||||||||||     
T  26412005 aaaaatgaatttattttaaataaaataagttaataaatcaaaagtaattaatattttatacgaggactgatttgcaataagatataatttagtcttacaa 26412104  T
Q  110 tggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccat 209  Q
    ||||| |||||||||| | |||||||||||||||||||||  || |||||| ||||| ||||| |||||||| || ||||||||||||||||||||||||    
T  26412105 tggtccatcacaaagatattagctgacatgacatcaacaatcatgctattggctaaataaaatgactttttcaaataagtcattttcttgactacaccat 26412204  T
Q  210 aga 212  Q
    |||    
T  26412205 aga 26412207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 8763021 - 8762858
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||||||| ||| ||||||||| |||    
T  8763021 taatattttgtacgaggactgatttgtaataaagtaaaatttagtgttacggtggtccatcacaaagacactcgctgacatggcatgaacaactatgcta 8762922  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccctt 221  Q
    |||  |||||||||| |||||||  ||||||||||||| |||||| |||||||||||| |||||    
T  8762921 ttggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaagctccctt 8762858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 59 - 212
Target Start/End: Complemental strand, 12080558 - 12080405
Alignment:
Q  59 aatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactat 158  Q
    ||||||||||| | ||||||||||||||||| ||||| |||||||||| ||||||| | ||  | |||||||||||||||||||||||||| |||  |||    
T  12080558 aatattttgtatgaggactgatttgtaataaggtaaagtttagtcttaaagtggtccaccagcaggacactagctgacatgacatcaacaattatgttat 12080459  T
Q  159 tgactaaacaaaataactttttctaaaaagtcattttcttgactacaccataga 212  Q
     |||||||||||||||||||||| ||||||||| |||| |||||||||||||||    
T  12080458 cgactaaacaaaataactttttcaaaaaagtcaatttcctgactacaccataga 12080405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 58 - 215
Target Start/End: Original strand, 13888330 - 13888487
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | |||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||| ||||||||| | |    
T  13888330 taatattttgtatgaggactgatttataataaagtaaaatttagtgttacaggggtccatcacaaagacactagctgacatggcataaacaactatgcaa 13888429  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagc 215  Q
    |||  |||| ||||| |||||||  ||||||||||||| || ||||||||||||||||    
T  13888430 ttggttaaataaaatgacttttttaaaaaagtcattttttttactacaccatagaagc 13888487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 3014683 - 3014825
Alignment:
Q  77 tgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataact 176  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| ||| ||||||||| ||||||  |||||||||| |||    
T  3014683 tgatttgtaataaagtaaaatttagtgttacagtggtccatcacaaagacactaactgacatggcatgaacaactatgctattggttaaacaaaatgact 3014782  T
Q  177 ttttctaaaaagtcattttcttgactacaccatagaagccccct 220  Q
    ||||  ||||| ||||||| |||||| ||||||| |||| ||||    
T  3014783 tttt-aaaaaaatcattttgttgactgcaccataaaagctccct 3014825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 191
Target Start/End: Complemental strand, 33848206 - 33848039
Alignment:
Q  24 tttaaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaa 123  Q
    |||||||| ||  |||||||||||||||| ||| |||||||||||| | ||| |||||| |||||| ||||| |||||||||| ||| ||||||||  |     
T  33848206 tttaaataaaacaagttaataaatcaaaaataattaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagagtagtctatcagcat 33848107  T
Q  124 gacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtca 191  Q
    |||||||||| ||||| ||| ||||| |||| |||||| |||||||| |||||||||| ||| |||||    
T  33848106 gacactagcttacatgtcattaacaattatattattgattaaacaaagtaactttttcaaaatagtca 33848039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 33752567 - 33752405
Alignment:
Q  24 tttaaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaa 123  Q
    |||||||| ||  |||||||||||||||| ||| |||||||||||| | ||| |||||| |||||| ||||| |||||||||| ||| ||||| ||  |     
T  33752567 tttaaataaaacaagttaataaatcaaaaataattaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagagtagtctaccaacat 33752468  T
Q  124 gacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaa 186  Q
    |||| ||||| ||||| ||| ||||| |||| ||||||||||||||| |||||||||||||||    
T  33752467 gacagtagctcacatgtcattaacaattatattattgactaaacaaagtaactttttctaaaa 33752405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 10053786 - 10053953
Alignment:
Q  23 atttaaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactga--tttgtaataaagtaaaatttagtcttacagtggtctatcac 120  Q
    ||||||||| ||| |||||||||||||| ||||| |||||||||||| | |||||||  |||||||||||||||||||||||| || |||||||          
T  10053786 atttaaataaaataagttaataaatcaagagtaattaatattttgtatgaggactgatttttgtaataaagtaaaatttagtcgtagagtggtc------ 10053879  T
Q  121 aaagacactagctgacatgacatcaacaactatactattgactaaacaaa-ataactttttctaaaaagtcattttc 196  Q
        ||||||||||||||||||||||||  ||||||||||  |||||||| ||||||||||| ||||||||| ||||    
T  10053880 ---cacactagctgacatgacatcaacagttatactattgggtaaacaaacataactttttcaaaaaagtcaatttc 10053953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 13381110 - 13381251
Alignment:
Q  44 aaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacat 143  Q
    ||||||||||||| |||||||||||| | ||| |||||| |||||| ||||| ||||| |||| || |||| | ||  |  |||||||||||||||||||    
T  13381110 aaatcaaaagtaattaatattttgtatgaggattgatttataataaggtaaagtttagccttagagaggtccaccagcagaacactagctgacatgacat 13381209  T
Q  144 caacaactatactattgactaaacaaaataactttttctaaaa 186  Q
    |||||  |||||||||||||||||||||||| |||||||||||    
T  13381210 caacagttatactattgactaaacaaaataa-tttttctaaaa 13381251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 25654588 - 25654733
Alignment:
Q  74 gactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaata 173  Q
    |||||||||||||||| ||||| |||||| ||| ||||||| ||||  || ||||||| |||||| |||||||||| ||||||||||  |||||||||||    
T  25654588 gactgatttgtaataaggtaaagtttagttttagagtggtccatcaataatacactagttgacat-acatcaacaattatactattggttaaacaaaata 25654686  T
Q  174 actttttctaaaaagtcattttcttgactacaccatagaagccccctt 221  Q
    ||||||   ||||||||| ||| |||||  ||||||||||||||||||    
T  25654687 acttttctaaaaaagtca-tttattgacagcaccatagaagccccctt 25654733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 58 - 219
Target Start/End: Original strand, 22616716 - 22616874
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | ||||||||||||||||| ||||| |||||| ||| ||||||| | ||  | |||||||||||||||||   |  ||  |||||||    
T  22616716 taatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggtccaccagcaggacactagctgacatga---ctgcagttatacta 22616812  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccc 219  Q
    ||| |||||||||||||||||| | ||||| ||| |||  ||||| ||||||||||||||||    
T  22616813 ttggctaaacaaaataacttttccaaaaaaatcagttttctgactgcaccatagaagccccc 22616874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 219
Target Start/End: Original strand, 10237636 - 10237796
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    ||||||||||||||  |||| ||||||||||| ||||| ||||||  || ||||||||| ||  | |||| |||||||||||||||| ||   |||||||    
T  10237636 taatattttgtacgatgactaatttgtaataaggtaaagtttagttctagagtggtctaccaacatgacattagctgacatgacatcgac-gttatacta 10237734  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccc 219  Q
    ||| ||||||||||||||||||   ||||||||| | | |||||| |||  |||||||||||    
T  10237735 ttggctaaacaaaataacttttctaaaaaagtcagtcttttgactgcactgtagaagccccc 10237796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 31878612 - 31878772
Alignment:
Q  63 ttttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgac 162  Q
    ||||||| ||| |||||| |||||||| ||||| |||| | ||| ||||||| | ||  | ||||||||||| || |||||| |||  ||||||||||      
T  31878612 ttttgtatgggaactgatctgtaataaggtaaagtttaattttagagtggtccaccaacaggacactagctggcacgacatcgacagttatactattggt 31878711  T
Q  163 taaacaaaataactttttctaaaaagtc-attttcttgactacaccatagaagcccccttaa 223  Q
    |||||||| ||||||||| ||||||||| |||||||| ||| |||| |||||||||| ||||    
T  31878712 taaacaaactaactttttttaaaaagtcaattttctt-acttcaccgtagaagccccattaa 31878772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 33163738 - 33163849
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| |  |||||||||||||||| ||||| |||||| ||| ||||||| | ||  | |||||||||||||||||||||  ||  |||||||    
T  33163738 taatattttgtatgaagactgatttgtaataaggtaaagtttagttttaaagtggtcca-cagcatgacactagctgacatgacatcggcagttatacta 33163836  T
Q  158 ttgactaaacaaa 170  Q
    |||||||||||||    
T  33163837 ttgactaaacaaa 33163849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 216
Target Start/End: Complemental strand, 36055681 - 36055542
Alignment:
Q  77 tgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataact 176  Q
    ||||||||||||| ||||| |||||| ||| ||||| | | ||  | |||||||| |||| |||||||  ||  |||||||||  |||||||||||||||    
T  36055681 tgatttgtaataaggtaaagtttagttttagagtgggccaccagcacgacactagttgacttgacatcgccagttatactattagctaaacaaaataact 36055582  T
Q  177 ttttctaaaaagtcattttcttgactacaccatagaagcc 216  Q
    ||| | ||||||| | ||| ||||||||||| ||||||||    
T  36055581 tttccaaaaaagttagttttttgactacaccttagaagcc 36055542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 12164120 - 12164016
Alignment:
Q  73 ggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaat 172  Q
    ||||||||||||||||||  ||| |||||  ||||| ||||| | ||  || ||||||||||||||||||||||  | ||| |||||||||||||||| |    
T  12164120 ggactgatttgtaataaaaaaaagtttagatttacaatggtccaccaacaatacactagctgacatgacatcaatgattatcctattgactaaacaaatt 12164021  T
Q  173 aactt 177  Q
    |||||    
T  12164020 aactt 12164016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 29766627 - 29766508
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | | ||| ||||||||||| ||||| |||||||||| ||||||| ||||  |  ||||||| ||||||| ||| ||||  |||||||    
T  29766627 taatattttgtatgagaactaatttgtaataaggtaaagtttagtcttagagtggtccatcagtagaacactagttgacatggcattaacagttatacta 29766528  T
Q  158 ttgactaaacaaaataactt 177  Q
    |||  |||| ||||||||||    
T  29766527 ttggataaataaaataactt 29766508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 21321040 - 21321130
Alignment:
Q  125 acactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagc 215  Q
    |||||||||| ||||| |||  ||  |||||||||| |||||||||||||||||||| ||||||||| |||  || || ||||||||||||    
T  21321040 acactagctggcatgaaatcgtcagttatactattggctaaacaaaataactttttcaaaaaagtcagttttctggctgcaccatagaagc 21321130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 27579268 - 27579410
Alignment:
Q  77 tgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataact 176  Q
    ||||||||||||| ||||| |||||| ||| ||||||| | ||  |  ||||||||| |||||||||| |||  |||| ||||| ||||| | |||||||    
T  27579268 tgatttgtaataaggtaaagtttagttttagagtggtccaccagtagaacactagctaacatgacatcgacagttatattattgtctaaagataataact 27579367  T
Q  177 ttttctaaaaagtcattttcttgactacaccatagaagccccc 219  Q
    ||| | ||||||| | |||  |||||  ||| |||||||||||    
T  27579368 tttccaaaaaagttagttttctgactgtaccgtagaagccccc 27579410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 41417401 - 41417289
Alignment:
Q  61 tattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattg 160  Q
    ||||||||| |  |||||||||||||||| |||||||||||| ||| | || || | ||  | ||||| ||||||||||||||| |||  |||||||||     
T  41417401 tattttgtatgatgactgatttgtaataaggtaaaatttagttttaaaatgatccaccagcatgacaccagctgacatgacatcgacagttatactatta 41417302  T
Q  161 actaaacaaaata 173  Q
      |||||||||||    
T  41417301 gttaaacaaaata 41417289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 23954599 - 23954550
Alignment:
Q  172 taactttttctaaaaagtcattttcttgactacaccatagaagccccctt 221  Q
    |||||||||| ||||||||| |||| ||||| |||||||||||| |||||    
T  23954599 taactttttcaaaaaagtcagtttcctgactgcaccatagaagctccctt 23954550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 1872771 - 1872575
Alignment:
Q  24 tttaaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaa 123  Q
    |||||||| ||| |||||||||||||||||||| ||||||||||||   |||||||||| |||||||||||||||| || ||||| || || ||||||||    
T  1872771 tttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttataataaagtaaaatttggttttacaatg-tccatcacaaa 1872673  T
Q  124 gacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccctt 221  Q
    |||| ||||||||||| |||||||||||||  || || || |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  1872672 gacattagctgacatggcatcaacaactatgttaatggctgaacaaaatgactttttcaaaaaagtcattttcttgactacaccatagaagtcccctt 1872575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 34685998 - 34686131
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | ||||||||||||||||||||||| |||||||||| ||||||||| |   | ||||||   ||||||||||| ||||  |||||||    
T  34685998 taatattttgtatgaggactgatttgtaataaagtaaagtttagtcttagagtggtctaccggcaggacactgcttgacatgacattaacagttatacta 34686097  T
Q  158 ttgactaaacaaaataactttttctaaaaagtca 191  Q
    || |||||| |||||||||||| | |||||||||    
T  34686098 ttaactaaaaaaaataacttttccaaaaaagtca 34686131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 4108738 - 4108579
Alignment:
Q  60 atattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactatt 159  Q
    |||||||||| |  ||||| ||||||||||  ||||  ||||| ||| ||||||| | ||  | ||||||||||||||||| | |  ||| |||| ||||    
T  4108738 atattttgtatgaagactgttttgtaataagataaagcttagttttaaagtggtccaccaacatgacactagctgacatgataacggcaattatattatt 4108639  T
Q  160 gactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccc 219  Q
    |||||||||||||||||||||| ||||||||| ||| |||||| |||| || ||||||||    
T  4108638 gactaaacaaaataactttttcaaaaaagtcaattttttgacttcaccgtaaaagccccc 4108579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 23176610 - 23176479
Alignment:
Q  60 atattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactatt 159  Q
    |||||||||| | ||||| |||||||||||  ||||  ||||| ||| ||||||| ||||  | ||||||||||||||||| |||   || |||||||||    
T  23176610 atattttgtatgaggactaatttgtaataagataaagcttagttttagagtggtccatcaacatgacactagctgacatgatatcggaaattatactatt 23176511  T
Q  160 gactaaacaaaataactttttctaaaaagtca 191  Q
    || ||||||||||||||||||| |||||||||    
T  23176510 gaataaacaaaataactttttcaaaaaagtca 23176479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 3038628 - 3038761
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| |  || ||||||||||||| ||||| |||||| ||| ||||||| | ||  |||||||| | ||||||||||||| ||| | |||||    
T  3038628 taatattttgtatgatgattgatttgtaataaggtaaagtttagttttagagtggtccaccagcaagacacttgttgacatgacatcagcaattctacta 3038727  T
Q  158 ttgactaaacaaaataactttttctaaaaagtca 191  Q
    ||| ||||||||||||| |||||  |||||||||    
T  3038728 ttggctaaacaaaataatttttttaaaaaagtca 3038761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 213
Target Start/End: Complemental strand, 28220856 - 28220703
Alignment:
Q  60 atattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactatt 159  Q
    |||||||||| | |||||||||||||||||  ||||  ||||| ||| ||||||| | ||  | |||| ||||  |||||| ||| |||| |||||||||    
T  28220856 atattttgtatgaggactgatttgtaataagataaagcttagttttagagtggtccaccaacatgacattagcaaacatgatatcgacaattatactatt 28220757  T
Q  160 gactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaa 213  Q
    |||||||||||||||||||||| |||| ||||  ||  |||||||||| |||||    
T  28220756 gactaaacaaaataactttttcaaaaatgtcaaatttctgactacaccttagaa 28220703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 30650967 - 30650894
Alignment:
Q  151 tatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagcccccttaat 224  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||||||| |||| ||||||| ||||||||    
T  30650967 tatacaattgactaaacaaaataactttttcaaaaaagtcaatttcttgactgcaccgtagaagctcccttaat 30650894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 18756492 - 18756339
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | |||| |||||||||||| |||||  ||||| ||| ||||||| | ||  | |||| ||||| |||| |||||  ||| |||| ||    
T  18756492 taatattttgtatgaggacagatttgtaataaggtaaagattagttttagagtggtccaccagtaggacattagctaacataacatcggcaattatatta 18756393  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatag 211  Q
    ||| |||||||||||||||||||| ||||| ||| |||  ||||| ||||||||    
T  18756392 ttggctaaacaaaataactttttccaaaaaatcaattttctgactgcaccatag 18756339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 7290942 - 7291073
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaa---gacactagctgacatgacatcaacaactata 154  Q
    |||||||||||| | ||| |||||||||||||  |||| |||||| ||| ||||||   |||||||   |||||||| ||| |||||||| |||  ||||    
T  7290942 taatattttgtatgaggattgatttgtaataagataaagtttagttttagagtggt---tcacaaacaggacactagttgatatgacatcgacagttata 7291038  T
Q  155 ctattgactaaacaaaataactttttctaaaaagt 189  Q
    |||||| ||||||||||||| |||||| |||||||    
T  7291039 ctattgcctaaacaaaataattttttcaaaaaagt 7291073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 3859361 - 3859399
Alignment:
Q  151 tatactattgactaaacaaaataactttttctaaaaagt 189  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  3859361 tatactattggctaaacaaaataactttttcaaaaaagt 3859399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 5299759 - 5299710
Alignment:
Q  172 taactttttctaaaaagtcattttcttgactacaccatagaagccccctt 221  Q
    |||||||||| ||||||||| |||| ||||| |||||||||||| |||||    
T  5299759 taactttttcaaaaaagtcagtttcatgactgcaccatagaagctccctt 5299710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 37970332 - 37970284
Alignment:
Q  172 taactttttctaaaaagtcattttcttgactacaccatagaagccccct 220  Q
    |||||||||| ||||||||| |||| ||||| |||||||||||| ||||    
T  37970332 taactttttcaaaaaagtcactttcctgactgcaccatagaagctccct 37970284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 14246381 - 14246577
Alignment:
Q  24 tttaaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaa 123  Q
    |||||||| ||| |||| ||||||||||| ||| ||||||||||| |  ||||| |||||||||||||||||||||||||||| ||||||| ||||||||    
T  14246381 tttaaataaaataagtttataaatcaaaaataattaatattttgttcaaggacttatttgtaataaagtaaaatttagtcttatagtggtccatcacaaa 14246480  T
Q  124 gacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccct 220  Q
    ||||  |||||||||| ||| || || ||| |||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  14246481 gacatcagctgacatggcattaagaattatgctattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagcaccct 14246577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 5915095 - 5914938
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    ||||||||| || | ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||  || ||||||| | |||    
T  5915095 taatattttttatgaggactaatttgtaataaagtaaaatttagtgttacagtggtccatcacaaagacactagctgacatggtatgaacaactttgcta 5914996  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagc 215  Q
    |||  |||||||||| |||||||  ||||||||||||| |||||| ||||||||||||    
T  5914995 ttggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaagc 5914938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 5813411 - 5813587
Alignment:
Q  1 atgaataacaaaaaa-tgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatt 98  Q
    ||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||| ||||||||| |||   |||| |||| |||||||||||| ||    
T  5813411 atgaataacaaaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttatacaatgacttatttttaataaagtaaa-tt 5813509  T
Q  99 tagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataactttt 179  Q
    |||||||||||||||| |||| |||||||||| |||||||| |||||| |||    |||||| ||||||||||| ||||||    
T  5813510 tagtcttacagtggtccatcataaagacactaactgacatggcatcaagaac---gctattggctaaacaaaatgactttt 5813587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 17612559 - 17612686
Alignment:
Q  60 atattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactatt 159  Q
    ||||||| || | ||||| ||||||||||| |||||||||||| ||| ||||||| | ||  | ||||||||||||||||||||| |||  |||||||||    
T  17612559 atattttctatgaggactaatttgtaataaggtaaaatttagttttagagtggtccaccaacaggacactagctgacatgacatcgacagttatactatt 17612658  T
Q  160 gactaaacaaaataactttttctaaaaa 187  Q
    | ||||| |||||||||||||| |||||    
T  17612659 ggctaaataaaataactttttcaaaaaa 17612686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 2266681 - 2266553
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | ||||||||||||||||| ||||| |||| | ||| || |||| | ||  | |||||||||||||||| |||| |||  |||||||    
T  2266681 taatattttgtatgaggactgatttgtaataatgtaaagtttatt-ttagaggggtccaccagcaggacactagctgacatggcatcgacagttatacta 2266583  T
Q  158 ttgactaaacaaaataactttttctaaaaa 187  Q
    ||| |||||||||||||||||| |||||||    
T  2266582 ttggctaaacaaaataacttttcctaaaaa 2266553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 9743813 - 9743972
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | |||||| |||||||||| |||||||||||| ||| |||| ||   ||| | |||||||| | ||||||| |  |||| |||| ||    
T  9743813 taatattttgtatgaggactggtttgtaataatgtaaaatttagttttagagtgatc---caccaggacactagttaacatgacgttgacaattatatta 9743909  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccct 220  Q
    |||  ||||||||||||||||||| ||||||||| ||| |||||| |||| || || ||||||    
T  9743910 ttggttaaacaaaataactttttcaaaaaagtcaattttttgacttcaccgtaaaacccccct 9743972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 22722026 - 22721927
Alignment:
Q  108 agtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacacc 207  Q
    ||||||| ||||  |||||||||||||||||| ||||||||  ||| | |||| ||||||||||| |||||| | |||||||||||||||| ||||||||    
T  22722026 agtggtccatcaacaagacactagctgacatggcatcaacatttattccattggctaaacaaaatgacttttccaaaaaagtcattttcttaactacacc 22721927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 2570701 - 2570822
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||  | ||| ||||||||||||| ||||| |||||| ||| ||||||| | ||  |  ||||||||| |||||||||| |||| |||| ||    
T  2570701 taatattttgtttgaggaatgatttgtaataaggtaaagtttagttttagagtggtccaccagcagaacactagctaacatgacatcgacaattatatta 2570800  T
Q  158 ttgactaaacaaaataactttt 179  Q
    ||| ||||||| ||||||||||    
T  2570801 ttgtctaaacataataactttt 2570822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 28292506 - 28292430
Alignment:
Q  37 agttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggt 113  Q
    |||||||||||||||||||| |||||||||||| |   | ||||||||||||| ||||| |||||||||| ||||||    
T  28292506 agttaataaatcaaaagtaattaatattttgtatgattattgatttgtaataaggtaaagtttagtcttagagtggt 28292430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 37795138 - 37795210
Alignment:
Q  143 tcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagc 215  Q
    |||||||||||  ||||| || |||||||| |||||||| ||| |||||||||||| ||||||||||||||||    
T  37795138 tcaacaactatgatattggctgaacaaaatgactttttcaaaagagtcattttcttaactacaccatagaagc 37795210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 22722101 - 22722026
Alignment:
Q  11 aaaaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgta 85  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||  |||||||||||||  || |||||||||    
T  22722101 aaaaatgattttattttaaataaaataagttaataaatcaaaagtaatcaatattttgtacgatgaatgatttgta 22722026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 47237449 - 47237623
Alignment:
Q  28 aatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagaca 127  Q
    |||| ||| |||||||||||||||||||| ||||  ||| || | |||| |||||||||||| | ||| ||||| |||| | |||| |||||  |  |||    
T  47237449 aataaaataagttaataaatcaaaagtaattaatgctttctatgaggaccgatttgtaataaggaaaagtttagacttaaaatggtttatcagcagtaca 47237548  T
Q  128 ctagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgact 202  Q
    ||| |||||||| ||||||||  |||   |||||||||| ||||||| | |||| ||||| ||| ||| ||||||    
T  47237549 ctaactgacatggcatcaacagttatcaaattgactaaagaaaataaatgtttcaaaaaactcagttttttgact 47237623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 49878898 - 49879006
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| |  ||||||||| |||||| ||||| |||||||||| | ||||| | ||   ||||||||| ||||||||||||||||| ||||  |    
T  49878898 taatattttgtatgatgactgatttataataaggtaaagtttagtcttagaatggtccacca-gcagacactagttgacatgacatcaacaattatatca 49878996  T
Q  158 ttgactaaac 167  Q
    ||||||||||    
T  49878997 ttgactaaac 49879006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 2708206 - 2708270
Alignment:
Q  151 tatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagc 215  Q
    ||||||||||||||||||||||||||||||  ||||||||| |||  ||||| |||| |||||||    
T  2708206 tatactattgactaaacaaaataacttttttaaaaaagtcaattttctgacttcaccgtagaagc 2708270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 54995068 - 54995015
Alignment:
Q  61 tattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtc 114  Q
    ||||||||| | |||||||||||||||||||||||| ||||| ||| |||||||    
T  54995068 tattttgtatgaggactgatttgtaataaagtaaaagttagttttagagtggtc 54995015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 9409522 - 9409580
Alignment:
Q  132 ctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtca 191  Q
    ||||||||||||||| |  ||||||||||||||| |||||||||| |||| |||||||||    
T  9409522 ctgacatgacatcaa-agttatactattgactaatcaaaataactctttcaaaaaagtca 9409580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 36493522 - 36493473
Alignment:
Q  172 taactttttctaaaaagtcattttcttgactacaccatagaagccccctt 221  Q
    |||||||||| ||||||||| |||| ||||| |||||||||||| |||||    
T  36493522 taactttttcaaaaaagtcaatttcctgactgcaccatagaagctccctt 36493473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 47073112 - 47073059
Alignment:
Q  168 aaaataactttttctaaaaagtcattttcttgactacaccatagaagccccctt 221  Q
    |||||||||||||| ||| ||||| |||  |||||||||||||||||| |||||    
T  47073112 aaaataactttttcaaaatagtcaatttactgactacaccatagaagcaccctt 47073059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 28292427 - 28292363
Alignment:
Q  151 tatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagc 215  Q
    |||||||||| ||||| |||||||||||||  |||||||||  ||||||||| |||  |||||||    
T  28292427 tatactattggctaaataaaataacttttttaaaaaagtcaggttcttgactgcactgtagaagc 28292363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 8414 - 8208
Alignment:
Q  11 aaaaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacag 109  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||| | ||||| | ||||||||||||||| ||||||| || ||    
T  8414 aaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtatgaggactaagttgtaataaagtaaagtttagtcgtagag 8315  T
Q  110 tggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccat 209  Q
    ||||| ||||  |||||| |||||||||||| |||||| |||||  |||||  |||| ||||| |||||||| ||||||||||||||||||| |||||||    
T  8314 tggtccatcaacaagacattagctgacatgatatcaactactatgttattggttaaataaaatgactttttcaaaaaagtcattttcttgacaacaccat 8215  T
Q  210 agaagcc 216  Q
    |||||||    
T  8214 agaagcc 8208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 24 - 221
Target Start/End: Original strand, 6357010 - 6357207
Alignment:
Q  24 tttaaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaa 123  Q
    |||||||| ||| |||| ||||||||||||||| ||||||||||| |  ||||| |||| ||||||||||||||||||||||| ||||||| ||||||||    
T  6357010 tttaaataaaataagtttataaatcaaaagtaattaatattttgttcaaggacttatttataataaagtaaaatttagtcttatagtggtccatcacaaa 6357109  T
Q  124 gacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccctt 221  Q
    ||||  |||||||||| ||| || || ||| |||||| |||||  |||| |||||||| ||||||||||||||||||||||||||||||||| |||||    
T  6357110 gacatcagctgacatggcattaagaattatgctattggctaaattaaatgactttttcaaaaaagtcattttcttgactacaccatagaagcaccctt 6357207  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 59348 - 59560
Alignment:
Q  11 aaaaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacag 109  Q
    |||| ||||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||  ||||||||| ||||||  ||||||||||||||||      
T  59348 aaaattgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtacgatgactgatttataataagataaaatttagtcttacgt 59447  T
Q  110 tggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccat 209  Q
    ||||| ||||  ||| || ||||||||||| |||||| || ||| | |||| ||||| |||||||||||||| |||||||||||| ||| ||||||||||    
T  59448 tggtccatcaagaagccattagctgacatggcatcaataattatgcaattggctaaataaaataactttttcaaaaaagtcatttgcttaactacaccat 59547  T
Q  210 agaagccccctta 222  Q
    | ||| |||||||    
T  59548 aaaaggcccctta 59560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 58 - 225
Target Start/End: Original strand, 7565512 - 7565681
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaag--taaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatac 155  Q
    |||||||||||| | ||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||||||||| |    
T  7565512 taatattttgtatgaggactgatttgtaataaaaaataaaatttagtgttacagtggtccatcacaaagacactagctgacatggcatgaacaactatgc 7565611  T
Q  156 tattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagcccccttaatt 225  Q
    |||||  |||||||||| |||||||  ||||||||||||| |||||| |||| ||||||| |||||||||    
T  7565612 tattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccgtagaagctcccttaatt 7565681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 32652622 - 32652787
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | |||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||| ||| ||||||||| |||    
T  32652622 taatattttgtatgaggactgatttgtaataaagtaaaatttaatgtcatagtggtctatcacaaagacactagctgacatggcatgaacaactatgcta 32652721  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagcccccttaa 223  Q
    |||  |||||||||| |||||||  ||||||| ||||| |||||| |||||||||| | |||||||    
T  32652722 ttggttaaacaaaatgacttttttaaaaaagttatttttttgactgcaccatagaaactcccttaa 32652787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 43445434 - 43445222
Alignment:
Q  11 aaaaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacag 109  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||   ||||| ||||||||||||||||||||||||||||| |    
T  43445434 aaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactaatttgtaataaagtaaaatttagtcttacgg 43445335  T
Q  110 tggtctatcacaaagacactagctgacatgaca-------tcaacaactatactattgactaaacaaaataactttttct-aaaaagtcattttcttgac 201  Q
    ||||| |||  ||| ||| ||  ||||||| ||       | ||||||||| |||||| ||||| ||||| ||||||| | ||||| | |||||||||||    
T  43445334 tggtccatccgaaaaacattaattgacatggcataacaagttaacaactattctattggctaaataaaatgactttttttaaaaaaattattttcttgac 43445235  T
Q  202 tacaccatagaag 214  Q
    |||||||||||||    
T  43445234 tacaccatagaag 43445222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 58 - 217
Target Start/End: Original strand, 19093677 - 19093836
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | ||||||||||||||||| ||||| |||||| ||| |||||||   ||  |||||||||| ||| || |||||||||| |||||||    
T  19093677 taatattttgtaagaggactgatttgtaataaggtaaagtttagttttagagtggtcctccaacaagacactagttgagataacatcaacaattatacta 19093776  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccc 217  Q
    |||| |||||||| |||||||||  ||||||||| ||| |||||| |||| |||||||||    
T  19093777 ttgattaaacaaattaacttttttaaaaaagtcaattttttgactgcaccgtagaagccc 19093836  T

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Target: chr2; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 223
Target Start/End: Complemental strand, 18514557 - 18514392
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| |  || |||||| |||||||||||| || ||||||| ||||||| | ||  | |||||||| ||||||||||| ||||  |||||||    
T  18514557 taatattttgtatgatgattgatttataataaagtaaagttcagtcttatagtggtccaccagcacgacactagttgacatgacattaacagttatacta 18514458  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagcccccttaa 223  Q
    ||  |||||||||||||||||||| ||||| ||| |||| ||||| |||| |||||||||||||||    
T  18514457 ttagctaaacaaaataactttttcaaaaaattcagtttcctgactccaccgtagaagcccccttaa 18514392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 19073575 - 19073708
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||| ||| ||||||  | ||  | ||||||  |||||||||||||||||| |||||||    
T  19073575 taatattttatacgaggactgatttgtaataaggtaaaatttagttttaaagtggttcaccagcaggacactgactgacatgacatcaacaattatacta 19073674  T
Q  158 ttgactaaacaaaataactttttctaaaaagtca 191  Q
    ||||||||| |||||||||||| | |||||||||    
T  19073675 ttgactaaataaaataacttttacaaaaaagtca 19073708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 58 - 217
Target Start/End: Original strand, 6177997 - 6178156
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    ||||||||||||||  |||||||||||||||| ||||| ||||||  || ||||||| | ||  | |||||||||||||||||||||  ||  |||||||    
T  6177997 taatattttgtacgatgactgatttgtaataaggtaaagtttagttctagagtggtccaccaacatgacactagctgacatgacatcggcagttatacta 6178096  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccc 217  Q
    ||| ||||||||||||||||||   ||||||||| ||| |||||| |||| |||||||||    
T  6178097 ttggctaaacaaaataacttttctaaaaaagtcagttttttgactgcaccgtagaagccc 6178156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 181
Target Start/End: Complemental strand, 18059187 - 18059064
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| |  ||||||||||||| || ||||| |||||| ||| |||||||||| |  |  ||||||||| |||||||||| |||| |||||||    
T  18059187 taatattttgtatgatgactgatttgtaacaaggtaaagtttagttttagagtggtctattagcagcacactagctaacatgacatcgacaattatacta 18059088  T
Q  158 ttgactaaacaaaataactttttc 181  Q
    ||||||||||||||||||||||||    
T  18059087 ttgactaaacaaaataactttttc 18059064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 41644101 - 41644253
Alignment:
Q  63 ttttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgac 162  Q
    ||||||| | ||||||||||||||||| ||| | |||||| ||| ||||||| | ||  | |||||||||||||||||||||||||| |||| ||||| |    
T  41644101 ttttgtatgaggactgatttgtaataaggtagagtttagttttagagtggtccaccagcatgacactagctgacatgacatcaacaattatattattggc 41644200  T
Q  163 taaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagc 215  Q
    |||||||||||  |||||| ||||||| | ||| || ||| |||| |||||||    
T  41644201 taaacaaaatatatttttcaaaaaagtaagtttttttactgcaccgtagaagc 41644253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 41713386 - 41713550
Alignment:
Q  60 atattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactatt 159  Q
    |||||||||  | |||||||||||||||||  ||||| ||||| ||| ||||||| | ||  | ||||||||||||||||| ||  | || |||||||||    
T  41713386 atattttgtgtgaggactgatttgtaataagataaaacttagttttagagtggtccaccaacatgacactagctgacatgatattgataattatactatt 41713485  T
Q  160 gactaaacaaaataactttttc-taaaaagtcattttcttgactacaccatagaagcccccttaa 223  Q
    ||||||||||||||||||||||  ||||| ||| |||  ||||| |||| |||||||||||||||    
T  41713486 gactaaacaaaataactttttcaaaaaaaatcaatttgatgacttcaccgtagaagcccccttaa 41713550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 34441703 - 34441573
Alignment:
Q  60 atattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactatt 159  Q
    |||||||||| | |||||||||||||||||  ||||  ||||| ||| |||| || | ||  | ||||||||||||||||| | |  ||| |||||||||    
T  34441703 atattttgtatgaggactgatttgtaataagataaagcttagttttaaagtgatccaccaacatgacactagctgacatgataacggcaattatactatt 34441604  T
Q  160 gactaaacaaaataactttttctaaaaagtc 190  Q
    ||| ||| |||||||||||||| ||||||||    
T  34441603 gaccaaataaaataactttttcaaaaaagtc 34441573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 40912515 - 40912464
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacag 109  Q
    |||||||||||| | |||||||||||||||||||||||||||||| ||||||    
T  40912515 taatattttgtatgaggactgatttgtaataaagtaaaatttagtgttacag 40912464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 45412024 - 45411862
Alignment:
Q  13 aaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtg 111  Q
    |||||||||||||| ||| | ||| || ||||||||||||||||  | ||||||||||    |||||||||||| | ||| |||||||||||||| ||||    
T  45412024 aaatgattttattttaaacaaaataagctaataaatcaaaagtagttgatattttgtattatgactgatttgtagtgaaggaaaatttagtcttagagtg 45411925  T
Q  112 gtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataa 174  Q
    ||| | ||     |||| | | |||||| ||||||||| |||  |||||||||||||||||||    
T  45411924 gtccaccaacggaacaccaacggacatgtcatcaacaattatgatattgactaaacaaaataa 45411862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 18779216 - 18779111
Alignment:
Q  74 gactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaata 173  Q
    |||||||||||||||| ||||| |||||| ||| |||| ||   ||  | |||||||||| ||||||||||   |  |||||||||||||||||||||||    
T  18779216 gactgatttgtaataaggtaaagtttagttttagagtgatcatccagtaggacactagcttacatgacatcggtagttatactattgactaaacaaaata 18779117  T
Q  174 actttt 179  Q
    ||||||    
T  18779116 actttt 18779111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 39788435 - 39788307
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||| ||| | | ||||||||||||||| ||||| |||| | ||| ||||||| | ||  | ||||| |  |||||||||||| |||  |||||||    
T  39788435 taatatttcgtatgagaactgatttgtaataaggtaaagtttatttttagagtggtccaccagcaggacaccaattgacatgacatcgacagttatacta 39788336  T
Q  158 ttgactaaacaaaataactttttctaaaaa 187  Q
    ||||||||||||||| |||||||| |||||    
T  39788335 ttgactaaacaaaat-actttttcaaaaaa 39788307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 17244837 - 17244773
Alignment:
Q  154 actattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagcccc 218  Q
    ||||||||||||||||||||| |||||| ||||||||| |||  ||||| ||| |||||||||||    
T  17244837 actattgactaaacaaaataattttttcaaaaaagtcagttttctgactgcactatagaagcccc 17244773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 18947435 - 18947278
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | ||||||||||||||||| ||||| |||||| ||| ||||||  | ||  | ||||||||||  ||||| ||   |   |||||||    
T  18947435 taatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggtacaccagcaggacactagctagcatgatattggccgttatacta 18947336  T
Q  158 ttgactaaacaaaataactttttct-aaaaagtcattttcttgactacaccatagaagc 215  Q
    | ||||||||||||||| ||||||| ||||||||| |||  ||||| || |||||||||    
T  18947335 tcgactaaacaaaataa-tttttctgaaaaagtcagttttctgactgcatcatagaagc 18947278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 15651072 - 15651127
Alignment:
Q  59 aatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtc 114  Q
    ||||||||||| | ||||||||||||||||||||||| |||| | ||| |||||||    
T  15651072 aatattttgtatgaggactgatttgtaataaagtaaagtttaattttagagtggtc 15651127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 27355145 - 27355307
Alignment:
Q  13 aaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtg 111  Q
    |||||||||||||| ||| | ||| || ||||||||||||||||  | ||||||||||    |||||||||||| | ||  ||| |||||||||| ||||    
T  27355145 aaatgattttattttaaacaaaataagctaataaatcaaaagtagttgatattttgtattatgactgatttgtagtgaatgaaagtttagtcttagagtg 27355244  T
Q  112 gtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataa 174  Q
    ||| | ||    ||||| ||| |||||  ||||||||| |||  |||||| ||||||||||||    
T  27355245 gtccaccagcgggacaccagcggacatatcatcaacaattatgatattgattaaacaaaataa 27355307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 17244895 - 17244839
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtc 114  Q
    |||||||||||| | ||| ||||||||||||| ||||| |||||| ||| |||||||    
T  17244895 taatattttgtatgaggagtgatttgtaataaggtaaagtttagttttagagtggtc 17244839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 25441710 - 25441876
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||| |||    
T  25441710 taatattttgtatgaggactgatttgtgataaagtaaaatttagtgttacagtggtccatcacaaagacactagctaacatgacatgaacaactatgcta 25441809  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagcccccttaat 224  Q
    |||  |||||||||| |||||||  ||||||||||||| |||||| |||||||||||| ||| ||||    
T  25441810 ttggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaagctcccctaat 25441876  T

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Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 4487881 - 4487724
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||||||||| |||    
T  4487881 taatgttttgtatgaggactgatttgtaataaagtaaaatttagtgttacagtggtccatcacaaagacactagctgacatggcatgaacaactatgcta 4487782  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagc 215  Q
    |||  |||||||||| |||||||  ||||||||||||| || ||| ||||||||||||    
T  4487781 ttggttaaacaaaatgacttttttaaaaaagtcatttttttaactgcaccatagaagc 4487724  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 18306706 - 18306543
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||||| ||| ||||||||||||| |||||||||  ||| ||||||||| ||||  |||||||||||||||||| ||||||||  ||| |||    
T  18306706 taatattttgtacgaggattgatttgtaataaggtaaaatttgatctaacagtggtccatcagcaagacactagctgacatggcatcaacatttattcta 18306607  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccctt 221  Q
    ||| ||||||||||| || ||| | |||||||||||| ||| ||||||||||||| ||||||||    
T  18306606 ttggctaaacaaaatgacatttccaaaaaagtcatttccttaactacaccatagaggccccctt 18306543  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 11083978 - 11083826
Alignment:
Q  60 atattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactatt 159  Q
    ||||||||||   |||||||||||||||||  ||||  ||||| ||| |||||||||||||   ||||||||||||||||| ||  |||| |||||||||    
T  11083978 atattttgtataaggactgatttgtaataagataaagcttagttttagagtggtctatcac---gacactagctgacatgatattgacaattatactatt 11083882  T
Q  160 gactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagc 215  Q
     |||||| |||||||||||||| ||||||| | ||| |||||| |||| |||||||    
T  11083881 aactaaataaaataactttttcaaaaaagtaaattttttgacttcaccgtagaagc 11083826  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 4104239 - 4104372
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| |  || ||||||||||||| | ||| |||||| ||| ||||||| | ||  | ||||||| ||||||||||||| |||| |||||||    
T  4104239 taatattttgtatgaagattgatttgtaataaggcaaagtttagttttagagtggtccaccagcacgacactaactgacatgacatcgacaattatacta 4104338  T
Q  158 ttgactaaacaaaataactttttctaaaaagtca 191  Q
    ||||| | |||||||||||||||| |||||||||    
T  4104339 ttgacaagacaaaataactttttcaaaaaagtca 4104372  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 6613818 - 6613655
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    |||||||||||| | ||| | ||||||||||| || || |||||||||| ||||||| | ||  |   || ||| ||||||| ||| || |  |||||||    
T  6613818 taatattttgtatgaggattcatttgtaataaggtgaagtttagtcttagagtggtccaccagcagaccattagttgacatggcattaagacttatacta 6613719  T
Q  158 ttgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagccccctt 221  Q
    |||||||||||||||||||||||| ||||||||| |||| ||||| |||| || |||| |||||    
T  6613718 ttgactaaacaaaataactttttcaaaaaagtcagtttcctgactgcaccgtacaagctccctt 6613655  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26819798 - 26819694
Alignment:
Q  1 atgaataacaaaaaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaat-aaagtaaaatt 98  Q
    |||||||||||| ||| ||||||||| ||||| ||| |||| ||||||||||||||| |||||||||||||   | || ||||||||| |||||||||||    
T  26819798 atgaataacaaataattattttattttaaataaaataagtttataaatcaaaagtaattaatattttgtacaatggcttatttgtaataaaagtaaaatt 26819699  T
Q  99 tagtc 103  Q
    |||||    
T  26819698 tagtc 26819694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 30341505 - 30341572
Alignment:
Q  124 gacactagctgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtca 191  Q
    |||||||||| ||||||||||| ||| ||||||| || ||||||||||||||||| || || ||||||    
T  30341505 gacactagctaacatgacatcagcaattatactactggctaaacaaaataactttctcaaacaagtca 30341572  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 18309215 - 18309158
Alignment:
Q  14 aatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacg 71  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||    
T  18309215 aatgattttattttaaata-aataagttaataaatcaaaagtaattaatattttgtacg 18309158  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 26819684 - 26819644
Alignment:
Q  189 tcattttcttgactacaccatagaagccccc-ttaattaaa 228  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  26819684 tcattttcttgactacaccatagaagcccccgttaattaaa 26819644  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 34994071 - 34994183
Alignment:
Q  75 actgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatactattgactaaacaaaataa 174  Q
    |||||||||||||||  || |||||||| ||| | | ||| | ||  | ||||||||| |||||||||||||||  |||  ||||| |||||||||||||    
T  34994071 actgatttgtaataagatacaatttagttttagaatagtccaccagcatgacactagccgacatgacatcaacacttattatattggctaaacaaaataa 34994170  T
Q  175 ctttttctaaaaa 187  Q
     ||||| ||||||    
T  34994171 ttttttttaaaaa 34994183  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 19632047 - 19632132
Alignment:
Q  133 tgacatgacatcaacaactatactattgactaaacaaaataactttttctaaaaagtcattttcttgactacaccatagaagcccc 218  Q
    |||||||||||| |||  |||||||||| | |||||||||||||||||  ||||| ||| |||  | ||| |||| ||||||||||    
T  19632047 tgacatgacatcgacagttatactattgtccaaacaaaataactttttgaaaaaaatcaattttctaactgcaccgtagaagcccc 19632132  T

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Target: scaffold0200 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 24643 - 24522
Alignment:
Q  58 taatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaaagacactagctgacatgacatcaacaactatacta 157  Q
    ||||||||||||||  |||||||||||||||| ||||| ||||||  || |||| || | ||  | |||||||||||||||||||||  ||  |||||||    
T  24643 taatattttgtacgatgactgatttgtaataaggtaaagtttagttctagagtgatccaccaacatgacactagctgacatgacatcggcagttatacta 24544  T
Q  158 ttgactaaacaaaataactttt 179  Q
    ||| || |||||||||||||||    
T  24543 ttggcttaacaaaataactttt 24522  T

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Target: scaffold0262 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 11532 - 11443
Alignment:
Q  24 tttaaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggt 113  Q
    |||||| | ||| ||||||||||| | |||||| || ||||||||| | |||||||||||||||||  ||||||||||||||| ||||||    
T  11532 tttaaacaaaataagttaataaattataagtaattattattttgtatgaggactgatttgtaataagataaaatttagtcttagagtggt 11443  T

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Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 65972 - 66125
Alignment:
Q  37 agttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtggtctatcacaa-agacactagctga 135  Q
    |||||||||||||||||||| |||||||||||| | ||||| |||| |||||| ||||| |||||| ||| ||||||| |  |    | |||||| || |    
T  65972 agttaataaatcaaaagtaattaatattttgtatgaggactaatttataataaggtaaagtttagtgttaaagtggtccacgaatggacacactacctaa 66071  T
Q  136 catgacatcaacaactatactattgactaaacaaaataactttttctaaaaagt 189  Q
      || ||||||||  |||||||||| ||||||||||||| |||||| |||||||    
T  66072 attggcatcaacagttatactattggctaaacaaaataattttttcaaaaaagt 66125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 107904 - 108003
Alignment:
Q  13 aaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataatattttgtacggggactgatttgtaataaagtaaaatttagtcttacagtg 111  Q
    |||||||||||||| ||||| ||| ||||||||||| |||||||| | || |||| || |  |||||||||||||||| | ||| ||||| |||| ||||    
T  107904 aaatgattttattttaaataaaataagttaataaattaaaagtaatttatgttttctatgaagactgatttgtaataaggaaaagtttagacttagagtg 108003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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