View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7438_low_5 (Length: 290)
Name: NF7438_low_5
Description: NF7438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7438_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 15217201 - 15216925
Alignment:
| Q |
14 |
aatatcattcaaacggctcctcctcaccataacgcgccactaagactttataccataaaatccctctatcaacatgcatccttcaacaccaattacctaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15217201 |
aatatcattcaaacggctcctcctcaccataacgcgccactaagactttataccataaaatccctctatcaacatgcatccttcaacaccaattacctaa |
15217102 |
T |
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| Q |
114 |
taaatcaaaattaaacttcctcatcttcccttattcaccataacgtgccactaaccctcctcactgaacccttcctcacataacgcgccactaaccctaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15217101 |
taaatcaaaattaaacttcctcatcttcccttattcaccataacgcaccactaaccctcctcactgaacccttcctcacataacgcgccactaaccctaa |
15217002 |
T |
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| Q |
214 |
ccatactgacccttcactcccttcatcattcaaccgacccctcctcaccataacacaccactaacactttatactta |
290 |
Q |
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| T |
15217001 |
ccatactgacccttcactcccttcatcattcaaccaacccctcctcaccataatgcaccactaaaactttatactta |
15216925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 15216962 - 15216857
Alignment:
| Q |
32 |
cctcctcaccataacgcgccactaagactttataccataaaatccctctatcaacatgcatccttcaacaccaattacctaataaatcaaaattaaactt |
131 |
Q |
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|||||||||||||| || ||||||| ||||||||| |||||||||| |||| |||||||| || ||||||||||||| || |||| |||| |||||||| |
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| T |
15216962 |
cctcctcaccataatgcaccactaaaactttatact-taaaatccctttatctacatgcattctccaacaccaattacatagtaaagcaaagttaaactt |
15216864 |
T |
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| Q |
132 |
cctcatc |
138 |
Q |
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||||||| |
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| T |
15216863 |
cctcatc |
15216857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 21499334 - 21499374
Alignment:
| Q |
31 |
tcctcctcaccataacgcgccactaagactttataccataa |
71 |
Q |
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| T |
21499334 |
tcctcctcaccatacctcgcaactaagactttataccataa |
21499374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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