View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7438_low_6 (Length: 269)
Name: NF7438_low_6
Description: NF7438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7438_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 42125881 - 42125641
Alignment:
| Q |
8 |
tcggataattacagatgggacaatccagtctcatcctaatttttcttaacccagatgagacattctatttgtgttnnnnnnnnnnnnnnnngtatttttt |
107 |
Q |
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| T |
42125881 |
tcggataattacagatgggacaatccagtctcatcctaatttttcttaactcagatgagacattctatttgtgttaaataaaaaaataaaaaaa----tt |
42125786 |
T |
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| Q |
108 |
atattataaaaatgccgtattcatagagtatacaattcatggtttaagcggaacttcctt-nnnnnnnntggtttaagcgtaactaattaaaacctagat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
42125785 |
atattataaaaatgccgtattcatagagtatacaattcatggtttaagcggaacttccttaaaaaaaaatggtttaagcggaactaattaaaacctagat |
42125686 |
T |
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| Q |
207 |
tactaaaatatatacatgattataggatatagatagaagtgatatat |
253 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42125685 |
tact-aaatatatacatgattata-gatatagatagaagtgatatat |
42125641 |
T |
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