View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7438_low_8 (Length: 245)
Name: NF7438_low_8
Description: NF7438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7438_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 1020096 - 1020003
Alignment:
| Q |
28 |
aattgaactacctaaaagtactaacatgatccgagatattcaatttcgaggactattttgaaacattaaaaattcc-gagactaagttgagagc |
120 |
Q |
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| T |
1020096 |
aattggactacctaaaagtactaacatgatccgagattttcaatttcgaggactgttttgaaatattaaaaattccagagactaagttgagagc |
1020003 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 1019943 - 1019856
Alignment:
| Q |
140 |
aaatgcagcaacatattcttttaaattgtggtctgcaactgtaattgcggccaaaacataaagcattttgagatcttcacaatggcac |
227 |
Q |
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| T |
1019943 |
aaatgcagcaacatattcttttaaattgtagtctgcaacggcaattgcggccacaacataaaggattttgagatcttcacaacggcac |
1019856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 36645855 - 36645942
Alignment:
| Q |
140 |
aaatgcagcaacatattcttttaaattgtggtctgcaactgtaattgcggccaaaacataaagcattttgagatcttcacaatggcac |
227 |
Q |
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| T |
36645855 |
aaatgcagcaacatatgattttaaattgtggtctgcaacggcaattgcagccaacacatgaagcattttgagatcttcacagtggcac |
36645942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 36645701 - 36645806
Alignment:
| Q |
28 |
aattgaactacctaaaagtactaacatgatccgag-atattcaatttcgaggactattttgaaacattaaaaattcc-gagactaagttgagagcgtcct |
125 |
Q |
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| T |
36645701 |
aattggactatctaaacgtactaacatgatccgagaattttcaatttcaaagactattttgaaatattaaacattccagagactacgttgagagcgtcct |
36645800 |
T |
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| Q |
126 |
ataatt |
131 |
Q |
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|||||| |
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| T |
36645801 |
ataatt |
36645806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 22972636 - 22972696
Alignment:
| Q |
158 |
ttttaaattgtggtctgcaactgtaattgcggccaaaacataaagcattttgagatcttca |
218 |
Q |
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| T |
22972636 |
ttttaaattatggtccgcatctataattgcggccacaacataaagatttttgaggtcttca |
22972696 |
T |
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