View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7438_low_9 (Length: 242)
Name: NF7438_low_9
Description: NF7438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7438_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 38981300 - 38981116
Alignment:
| Q |
16 |
aatattaactaacattttaactacctcgtacacatattaacatcatcatgaatgaaagcaaagtgatgtacctccaaccctttttccttgaaaattggtg |
115 |
Q |
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| T |
38981300 |
aatattaactaacattttaactacctcgtacacatattaacatcatcatgaatgaaagcaaagtgatgtacctccaaccctttttcattgaaaattggtg |
38981201 |
T |
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| Q |
116 |
ccaagtattcataatattaaaattgaaagctagaaggctaaattggcgtcgaagtaaaatgttgtggcgaaaaaggcaaagcaat |
200 |
Q |
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| T |
38981200 |
ccaagtattcataatattaaaattgaaagctagaaggctaaattggcgtcgaagtaaaatgttgtggcgaaaaaggcaaagcaat |
38981116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 39909701 - 39909903
Alignment:
| Q |
19 |
attaactaacattttaactacctcgtacacatattaacatcatcatgaatgaaagcaaagtgatgtacctccaaccctttttccttgaa-----aattgg |
113 |
Q |
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| T |
39909701 |
attaaccaacattttaattgcccggtacacatacgaacattgtcatgaatgaaagcaaagtgatatacctccaacccttttttagtgaactgaaaattgg |
39909800 |
T |
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| Q |
114 |
tgccaagtattcataatattaaaattgaaagctagaaggctaaattggcgtcgaagtaaaatgttgtggcgaaaaaggcaaagcaatgacatatatcaaa |
213 |
Q |
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| T |
39909801 |
tgccaagtgttcataatattaaagtagaaagctataaggctaaattggcgtcgaagtaaaatgttatggccaaaaaggcaaagcaacaacataaatcaaa |
39909900 |
T |
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| Q |
214 |
atg |
216 |
Q |
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| T |
39909901 |
atg |
39909903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 29451986 - 29452060
Alignment:
| Q |
116 |
ccaagtattcataatat-taaaattgaaagctagaaggctaaattggcgtcgaagtaaaatgttgtggcgaaaaa |
189 |
Q |
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| T |
29451986 |
ccaagtattcataatatataaaatagaaagctagcagtctaaattggcattgaagtaaaatgttgtggccaaaaa |
29452060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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