View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7439_high_11 (Length: 343)
Name: NF7439_high_11
Description: NF7439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7439_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 47711454 - 47711134
Alignment:
| Q |
19 |
gggcatattacacctcatctttctcatagtaatattattcgccgcagtacttttatctgaggcagacaactacttaatctgaggagaattttcaagacga |
118 |
Q |
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| T |
47711454 |
gggcatattacaccttatctttctcatagtaatattattcgccgcagtacttttatctgaggcagacaactacttaatctgaggagaattttcaaga--- |
47711358 |
T |
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| Q |
119 |
gtctgattagtcaatgaaattgaactctgtgaggcaccaaaaccaactccatcatgctcccttgaatcaatatttttactttttaccaactgagaaattg |
218 |
Q |
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| T |
47711357 |
gtctgattagtcaatgaaattgaactctgtgaggcaccaaaaccaactccatcatgctcccttgaatcaatatttttactttttaccaactgagaaattg |
47711258 |
T |
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| Q |
219 |
tagaaattcccattttcgtctccaaacatggcttcactgctatgaaacttttcttggaacctacactatttaacttcaactttttatttttaccaacatc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||| |
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| T |
47711257 |
tagaaattcccattttcgtctccaaacatggcttcactgctatgaaacttttcttgaaacctacattatctaacttcaacttttta-ttttaccaacatc |
47711159 |
T |
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| Q |
319 |
tttcttctcaagtaaaatatgaaaa |
343 |
Q |
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| T |
47711158 |
tttcttctcaagtaaaatatgaaaa |
47711134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 43305561 - 43305798
Alignment:
| Q |
19 |
gggcatattacacctcatctttctcatagtaatattattcgccgcagtacttttatctgaggcagacaactacttaatctgaggagaattttcaagacga |
118 |
Q |
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| T |
43305561 |
gggcatattacacctcatctttctcacagtaatattattcgccgcagtacttttatctgaggcaggcaacttcttaatctgaggagaactttcaagacga |
43305660 |
T |
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| Q |
119 |
gtctgattagtcaatgaaattgaactctgtgaggcaccaaaaccaactccatcatgctcccttgaatcaatatttttactttttaccaactgagaaattg |
218 |
Q |
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||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
43305661 |
gtccgattagtcaatgacattgaactctgtgaggcatcaaaaccaactccatcatgctcccttgaatcaatagtattactttttaccaactgagaaattg |
43305760 |
T |
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| Q |
219 |
tagaaattcccattttcgtctccaaacatggcttcact |
256 |
Q |
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| T |
43305761 |
tagaaattccccttttcggctccaaagatggcttcact |
43305798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 343
Target Start/End: Original strand, 43305839 - 43305921
Alignment:
| Q |
264 |
aacttttcttggaacct---acactatttaacttcaactttttatttttaccaacatctttcttctcaagtaaaatatgaaaa |
343 |
Q |
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||||||||||||||||| ||| ||| ||||| ||| || ||||||||||||||||||||||| |||||||||| |||||| |
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| T |
43305839 |
aacttttcttggaacctcctacattatctaactccaagcttctatttttaccaacatctttcttcccaagtaaaatgtgaaaa |
43305921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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